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    nitr1d novel immune-type receptor 1d [ Danio rerio (zebrafish) ]

    Gene ID: 170990, updated on 27-Mar-2024

    Summary

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    Official Symbol
    nitr1dprovided by ZNC
    Official Full Name
    novel immune-type receptor 1dprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-020225-11
    See related
    Ensembl:ENSDARG00000112065 AllianceGenome:ZFIN:ZDB-GENE-020225-11
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    nitr1; nitr1.4; nitr1.15; nitr1.22; nitr1.32; nitr1.47; nitr1.62; nitr1d_3; si:dz219h16.1; si:busm1-219h16.1
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (17485761..17487420)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (17233788..17235447)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene novel immune-type receptor 1c Neighboring gene novel immune-type receptor 2c, pseudogene Neighboring gene si:busm1-186f8.12, pseudogene Neighboring gene si:busm1-186f8.13, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Developmental and tissue-specific expression of NITRs. Yoder JA, et al. Immunogenetics, 2010 Feb. PMID 20012603, Free PMC Article
    2. The medaka novel immune-type receptor (NITR) gene clusters reveal an extraordinary degree of divergence in variable domains. Desai S, et al. BMC Evol Biol, 2008 Jun 19. PMID 18565225, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    novel immune-type receptor 1d
    Names
    immune-type receptor
    novel immune-type receptor 1
    novel immune-type receptor 1.15
    novel immune-type receptor 1.22

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198349.1 → NP_938163.1  novel immune-type receptor 1d precursor

      See identical proteins and their annotated locations for NP_938163.1

      Status: PROVISIONAL

      Source sequence(s)
      AL591497
      UniProtKB/TrEMBL
      Q8UV37
      Conserved Domains (3) summary
      smart00410
      Location:148 → 227
      IG_like; Immunoglobulin like
      pfam07686
      Location:150 → 243
      V-set; Immunoglobulin V-set domain
      cl11960
      Location:35 → 130
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      17485761..17487420
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021477732.1 → XP_021333407.1  novel immune-type receptor 1d

      UniProtKB/TrEMBL
      A0A8M6Z796, A3KFQ1
      Related
      ENSDARP00000088856.5, ENSDART00000098083.5
      Conserved Domains (1) summary
      pfam07686
      Location:150 → 243
      V-set; Immunoglobulin V-set domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394681.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      264362..266021
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017356989.1 → XP_017212478.1  novel immune-type receptor 1d

      UniProtKB/TrEMBL
      A0A8M6Z796, A3KFQ1
      Conserved Domains (1) summary
      pfam07686
      Location:150 → 243
      V-set; Immunoglobulin V-set domain
    Nucleotide Protein
    Heading Accession and Version

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