GEO Browser - GEO

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244 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Arabidopsis thaliana
GSE51474	rpl24b/WT polysome loading and transcript levels (Arabidopsis thaliana)	Expression profiling by array Other	Arabidopsis thaliana	18	CEL TXT	Albrecht G von Arnim	Jan 01, 2014
GSE51480	PAB/WT polysome loading and transcript levels (Arabidopsis thaliana)	Expression profiling by array Other	Arabidopsis thaliana	22	CEL TXT	Albrecht G von Arnim	Jan 01, 2014
GSE55151	Differential expression of miRNAs and their target genes in senescing leaves and siliques: insights from massive sequencing of small RNAs and cleaved target RNAs	Non-coding RNA profiling by high throughput sequencing Other	Arabidopsis thaliana	14	TXT SRA Run Selector	Shawn R Thatcher	Sep 08, 2014
GSE55960	Chromosomal Architecture of Arabidopsis and its Implication in Transposon Intergration	Other	Arabidopsis thaliana	3	TXT SRA Run Selector	Stefan Grob	Aug 18, 2014
GSE58974	Global analysis of the RNA-protein interaction and RNA secondary structure landscapes of the Arabidopsis nucleus	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	10	BED TXT SRA Run Selector	Sager Jayesh Gosai	Dec 16, 2014
GSE60141	A Comprehensive Atlas of Arabidopsis Regulatory DNA [DAP-seq]	Other	Arabidopsis thaliana Zea mays	936	NARROWPEAK SRA Run Selector	Joseph R Ecker	May 25, 2016
GSE60143	In vitro, genomic context identification of transcription factor binding sites	Other Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Zea mays	941	NARROWPEAK	Joseph R Ecker	May 25, 2016
GSE60929	Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs in Arabidopsis	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	9	TXT SRA Run Selector	Peng Du	Aug 30, 2014
GSE61439	Pol-IV dependent transcripts in Arabidopsis	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	42	PDF TXT WIG XLSX SRA Run Selector	Steve Jacobsen	Sep 13, 2015
GSE63879	tRNA-derived small RNAs target transposable element transcripts	Non-coding RNA profiling by high throughput sequencing Other	Arabidopsis thaliana	11	TXT SRA Run Selector	German Martinez	Feb 23, 2017
GSE64389	RNA-directed DNA Methylation is associated with gene expression via chromosomal Interactions	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	12	TXT SRA Run Selector	M Jordan Rowley	Jun 01, 2016
GSE66224	Chemical modifications mark alternatively spliced and actively degrading messenger RNAs in Arabidopsis and humans	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Arabidopsis thaliana Homo sapiens	12	BED SRA Run Selector	Lee Elliott Vandivier	Oct 31, 2015
GSE68444	rRNA 5-methylcytosine in Arabidopsis thaliana	Non-coding RNA profiling by high throughput sequencing Other	Arabidopsis thaliana	25	XLS XLSX SRA Run Selector	Alice Louise Burgess	Oct 01, 2015
GSE68445	tRNA 5-methylcytosine in Arabidopsis thaliana	Other Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	11	XLS XLSX SRA Run Selector	Alice Louise Burgess	Oct 01, 2015
GSE68447	Conservation of m5C in rRNA in the kingdom Plantae	Other Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana Brassica rapa Caulerpa taxifolia Ginkgo biloba Nannochloropsis oculata Triticum turgidum subsp. durum	13	XLSX SRA Run Selector	Alice Louise Burgess	Oct 01, 2015
GSE68448	Conservation of m5C in tRNAs in the kingdom Plantae	Other Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana Brassica rapa Caulerpa taxifolia Ginkgo biloba Nannochloropsis oculata Triticum turgidum subsp. durum	14	XLS XLSX SRA Run Selector	Alice Louise Burgess	Oct 01, 2015
GSE68560	Acute effects of light on alternative splicing in light-grown plants	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	6	XLSX SRA Run Selector	Marcelo Yanovsky	Aug 09, 2016
GSE69802	Insights into the adaptive stress response of Arabidopsis thaliana to thermal stress by ribosomal profiling	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	6	TXT SRA Run Selector	Radoslaw Lukoszek	Oct 13, 2016
GSE69904	Arginine methylation regulates widespread alternative polyadenylation	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	11	BED WIG SRA Run Selector	xiaofeng cao	Jan 01, 2019
GSE71913	Genome-wide mapping of uncapped and cleaved transcripts reveals a role for the nuclear messenger RNA cap-binding complex in plant co-translational RNA decay	Other	Arabidopsis thaliana	4	TXT SRA Run Selector	Xiang Yu	Sep 30, 2016