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17 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Arabidopsis thaliana				Joseph R Ecker
GSE10877	Highly integrated single base resolution maps of the epigenome in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Methylation profiling by array Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16		CEL TXT	Joseph R Ecker	Apr 21, 2008
GSE10968	Highly integrated epigenome maps in Arabidopsis - transcriptome sequencing	Expression profiling by high throughput sequencing	Arabidopsis thaliana	4		TXT SRA Run Selector	Joseph R Ecker	Apr 21, 2008
GSE11070	A link between RNA metabolism and silencing affecting Arabidopsis development	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by genome tiling array	Arabidopsis thaliana	22		CEL TXT SRA Run Selector	Joseph R Ecker	May 15, 2008
GSE43858	Patterns of Population Epigenomic Diversity in Arabidopsis thaliana (RNA-Seq)	Expression profiling by high throughput sequencing	Arabidopsis thaliana	144		TSV SRA Run Selector	Joseph R Ecker	Mar 05, 2013
GSE79709	Unique cell-type specific patterns of DNA methylation in the root meristem (RNA-seq)	Expression profiling by high throughput sequencing	Arabidopsis thaliana	6		TSV SRA Run Selector	Joseph R Ecker	Mar 31, 2016
GSE79710	Unique cell-type specific patterns of DNA methylation in the root meristem	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	15		TSV	Joseph R Ecker	Mar 31, 2016
GSE80565	RNA-seq of abscisic acid-reponsive transcription factors	Expression profiling by high throughput sequencing	Arabidopsis thaliana	28		TXT SRA Run Selector	Joseph R Ecker	Feb 03, 2017
GSE80567	RNA-seq of abscisic acid-reponsive transcription factors [DIG]	Expression profiling by high throughput sequencing	Arabidopsis thaliana	10		TXT SRA Run Selector	Joseph R Ecker	Feb 03, 2017
GSE80568	ChIP-Seq and RNA-Seq of abscisic acid-reponsive transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	165		BED	Joseph R Ecker	Feb 03, 2017
GSE80744	Epigenomic and genome structural diversity in a worldwide collection of Arabidopsis thaliana	Expression profiling by high throughput sequencing	Arabidopsis thaliana	728		TSV TXT SRA Run Selector	Joseph R Ecker	Jul 14, 2016
GSE94486	A B-ARR-mediated cytokinin transcriptional network directs hormone-cross regulation and shoot development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	14		BED DIFF SRA Run Selector	Joseph R Ecker	Apr 25, 2018
GSE108401	The Complex Architecture of Transgene Insertions	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	39		BW TSV TXT SRA Run Selector	Joseph R Ecker	Mar 16, 2018
GSE122314	Epigenetic Control of a Multifunctional Stress Regulator	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	126		TSV TXT SRA Run Selector	Joseph R Ecker	Aug 19, 2019
GSE133408	The jasmonate-response genome regulatory program is defined by the direct targets of transcription factors MYC2 and MYC3, chromatin modification and gene expression changes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	96		BED CSV TXT WIG SRA Run Selector	Joseph R Ecker	Mar 13, 2020
GSE139296	PHYTOCHROME INTERACTING FACTORs trigger environmentally responsive chromatin dynamics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	109		BW TSV TXT SRA Run Selector	Joseph R Ecker	Apr 30, 2021
GSE226097	A Single-Nucleus Atlas of Seed-to-Seed Development in Arabidopsis	Expression profiling by high throughput sequencing	Arabidopsis thaliana	84		RDS SRA Run Selector	Joseph R Ecker	Mar 25, 2023
GSE226826	Time-resolved single-cell and spatial gene regulatory atlas of plants under pathogen attack	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	30		RDS SRA Run Selector	Joseph R Ecker	Apr 24, 2023