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20 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter						yijing zhang
GSE224228	A quantitative computational framework for allopolyploid single-cell data integration and core gene ranking in development [scRNA-seq]	Expression profiling by high throughput sequencing	Triticum aestivum	2	MTX TSV SRA Run Selector	yijing zhang	Sep 20, 2024
GSE207939	Wheat-RegNet: An encyclopedia of common wheat hierarchical regulatory network	Other	Triticum aestivum	1	TXT	yijing zhang	Jul 08, 2024
GSE198284	Subgenome-specific usage of transposable element-derived promoters and enhancers in bread wheat development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Triticum aestivum Triticum urartu	56	BED BW TXT	yijing zhang	Oct 12, 2023
GSE218538	LHP1-mediated conditional repression of subgenome-diversified defenses is responsible for the high plasticity of allopolyploid wheat	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Triticum aestivum	21	BW TXT XLS	yijing zhang	Oct 12, 2023
GSE192815	Death and birth of transposable elements underlie subgenome convergent and divergent transcription in common wheat	Genome binding/occupancy profiling by high throughput sequencing	Triticum aestivum	194	BED BW	yijing zhang	Oct 08, 2022
GSE178276	Nascent transcriptomic landscape in bread wheat detected Pol II-dependent enhancer transcription	Other	Triticum aestivum	9	BEDGRAPH SRA Run Selector	yijing zhang	Apr 06, 2022
GSE167227	Evolutionary rewiring of wheat abiotic stress responsive network by lineage-specific transposable elements [DAP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Triticum urartu	119	BW TXT SRA Run Selector	yijing zhang	Aug 31, 2021
GSE167228	Evolutionary rewiring of wheat abiotic stress responsive network by lineage-specific transposable elements I	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Triticum urartu	25	BW TXT SRA Run Selector	yijing zhang	Aug 31, 2021
GSE182693	Evolutionary rewiring of wheat abiotic stress responsive network by lineage-specific transposable elements [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Triticum urartu	2	BW XLS SRA Run Selector	yijing zhang	Aug 31, 2021
GSE167229	Evolutionary rewiring of wheat abiotic stress responsive network by lineage-specific transposable elements	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Triticum urartu	146	BW TXT XLS	yijing zhang	Aug 30, 2021
GSE178372	Distinct chromatin signatures and transcriptional landscape of functional genetic elements in allohexaploid wheat	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Triticum aestivum	27	BED BEDGRAPH BW TXT	yijing zhang	Jun 17, 2021
GSE139019	An atlas of wheat epigenetic regulatory elements reveals subgenome-divergence in the regulation of development and stress responses	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Triticum aestivum	124	BED BW TXT SRA Run Selector	yijing zhang	Feb 04, 2021
GSE139020	Homology-mediated inter-chromosomal interactions in hexaploid wheat lead to specific subgenome territories following polyploidization and introgression	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Triticum aestivum	9	BED TDF TXT SRA Run Selector	yijing zhang	Nov 30, 2020
GSE121903	Distinct chromatin signitures of promoters, enhancers and transposons in allohexaploid wheat	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Triticum aestivum	18	BED BW TXT SRA Run Selector	yijing zhang	Jun 21, 2019
GSE98301	H3K27 tri-methyltransferases CLF and SWN redundantly buffer ABA-induced senescence	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	20	BED TXT SRA Run Selector	yijing zhang	Dec 14, 2018
GSE113084	RdDM is involved in epigenetic regulation of strawberry fruit ripening	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Fragaria x ananassa	17	BW FA GFF3 TXT SRA Run Selector	yijing zhang	Nov 13, 2018
GSE107827	de novo re-construction of the core genome from ChIP-Seq for large-genome organisms	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Oryza sativa Oryza sativa Indica Group Oryza sativa Japonica Group Triticum aestivum	26	BED TXT SRA Run Selector	yijing zhang	May 27, 2018
GSE67322	Arabidopsis Flower and Embryo Developmental Genes are Repressed in Seedlings by Different Combinations of Polycomb Group Proteins in Association with Distinct Sets of Cis-regulatory Elements	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	29	BED TXT XLS SRA Run Selector	yijing zhang	Jan 19, 2016
GSE57706	Genome-wide maps of DNA methylation state in rice embryo and endosperm	Methylation profiling by high throughput sequencing	Oryza sativa	13	TXT SRA Run Selector	yijing zhang	Sep 01, 2015
GSE50242	MNase-seq analysis of Col-0 and chr11-1 chr17-1	Other	Arabidopsis thaliana	2	WIG SRA Run Selector	yijing zhang	Mar 30, 2014