GEO Browser - GEO

Series

Samples

Platforms

DataSets

34 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Arabidopsis thaliana		BED
GSE52805	Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting: BS-seq of Arabidopsis thaliana Col, Ler, and Cvi parental and reciprocal F1 hybrid embryo and endosperm	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	14	BED SRA Run Selector	Mary Gehring	Jul 08, 2014
GSE52814	Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	56	BED TXT	Mary Gehring	Jul 08, 2014
GSE54894	Genome-wide profiling of H3K27me1 and 5mC enrichment in young leaves of Arabidopsis thaliana	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	6	BED BEDGRAPH SRA Run Selector	François ROUDIER	Feb 03, 2015
GSE66585	Parental epigenetic asymmetry of PRC2-mediated histone modifications in the Arabidopsis endosperm	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	41	BED TXT SRA Run Selector	Juan C Santos-González	Apr 26, 2016
GSE70455	Dynamic of DNA methylation during Arabidopsis reproduction	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	19	BED SRA Run Selector	Daniel Grimanelli	Aug 01, 2017
GSE74398	A Dicer-Independent Route for Biogenesis of siRNAs that Direct DNA Methylation in Arabidopsis	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	76	BED TXT SRA Run Selector	Yijun Qi	Dec 17, 2015
GSE75071	On the Origin and Evolutionary Consequences of Gene Body DNA Methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis lyrata Arabidopsis thaliana Brassica oleracea Brassica rapa Capsella rubella Eutrema salsugineum	44	BED TSV SRA Run Selector	Robert J Schmitz	Jul 11, 2016
GSE79259	The second subunit of DNA-polymerase delta is required for genomic stability and epigenetic regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	18	BED TDF WIG XLS SRA Run Selector	Jinkui Cheng	Apr 26, 2016
GSE83355	The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	32	BED FA WIG SRA Run Selector	Julie Ann Law	Apr 26, 2017
GSE86447	RTEL1 modulates H3 occupancy in heterochromatic regions and acts synergistically with MET1/DDM1 to maintain genome integrity	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	20	BED TXT XLSX SRA Run Selector	Jinkui Cheng	Sep 06, 2019
GSE93024	TET-mediated epimutagenesis of the Arabidopsis thaliana methylome	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	32	BED TSV TXT SRA Run Selector	Robert J Schmitz	Mar 02, 2018
GSE93968	Proximal methylation features associated with nonrandom changes in gene body methylation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	36	BED TXT SRA Run Selector	Mary Gehring	Mar 29, 2017
GSE94075	The Arabidopsis DNA methylome is relatively impervious to abiotic stress	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	29	BED COV SRA Run Selector	Diep R Ganguly	Oct 03, 2017
GSE96994	DDM1/Lsh remodelers allow methylation of DNA wrapped in nucleosomes	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	15	BED BW GFF TXT SRA Run Selector	David B. Lyons	Nov 15, 2017
GSE121150	Excess light priming in Arabidopsis thaliana genotypes with altered DNA methylomes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	18	BED TXT SRA Run Selector	Diep R Ganguly	Nov 27, 2018
GSE125230	Site-specific manipulation of Arabidopsis loci using CRISPR-Cas9 SunTag systems	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	122	BED BW TXT WIG SRA Run Selector	Ashot Papikian	Jan 22, 2019
GSE126929	Paternally-acting canonical RNA-directed DNA methylation pathway genes sensitizes Arabidopsis endosperm to paternal dosage [Bisulfite-seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	6	BED TDF TXT SRA Run Selector	satyaki P Rajavasireddy	May 01, 2019
GSE132750	Photodamage repair pathways contribute to the accurate maintenance of DNA methylome landscape upon UV exposure	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	31	BED TXT SRA Run Selector	Jean Molinier	Nov 01, 2019
GSE148173	Noncoding RNA-mediated DNA methylation directs nucleosome positioning	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	20	BED CSV SRA Run Selector	Shriya Sethuraman	Apr 06, 2023
GSE148934	A viral guide RNA delivery system for CRISPR-based transcriptional activation and heritable targeted DNA demethylation	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	12	BED BW TXT SRA Run Selector	Colette L Picard	Feb 16, 2021