GEO Browser - GEO

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27 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Solanum lycopersicum		BW
GSE233265	Evolutional heterochromatin condensation delineates chromocenter formation and retrotransposon constraint in plants	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Nicotiana benthamiana Nicotiana tabacum Solanum lycopersicum	50	BW	Weifeng Zhang	Jun 22, 2024
GSE254893	Combined analysis of ATAC-Seq and RNA-Seq reveal a potential role of WRKY34 in tomato response to cold stress [ATAC]	Genome binding/occupancy profiling by high throughput sequencing	Solanum habrochaites Solanum lycopersicum	8	BW	Mingyue Guo	Feb 23, 2024
GSE193170	BS-seq of WT, slnor, and sldml2	Methylation profiling by high throughput sequencing	Solanum lycopersicum	14	BW	yujing lin	Dec 31, 2023
GSE171493	Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [pre-experiment]	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	24	BED BW SRA Run Selector	Yu Ma	Jun 30, 2023
GSE172249	Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [green fruit]	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	393	BED BW TXT SRA Run Selector	Yu Ma	Jun 30, 2023
GSE172260	Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [red fruit]	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	393	BED BW TXT SRA Run Selector	Yu Ma	Jun 30, 2023
GSE173208	Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	12	BW TXT SRA Run Selector	Yu Ma	Jun 30, 2023
GSE173212	Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [Bisulfite-seq]	Methylation profiling by high throughput sequencing	Solanum lycopersicum	2	BW SRA Run Selector	Yu Ma	Jun 30, 2023
GSE173213	Comprehensive characterization of cistrome and epicistrome involved in fruit ripening	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Solanum lycopersicum	824	BED BW	Yu Ma	Jun 30, 2023
GSE202902	SlWRKY33 confers cold tolerance through activation of various downstream signaling pathways in cultivated tomato	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	4	BW FA	Mingyue Guo	Feb 07, 2023
GSE220115	GLK ChIP-seq and ATAC-seq data in Arabidopsis, Tobacco, Tomato, Rice and Maize.	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Nicotiana benthamiana Oryza sativa Japonica Group Solanum lycopersicum Zea mays	20	BW NARROWPEAK	Sibo REN	Dec 08, 2022
GSE140537	RNA-seq data of Phytophthora infestans 88069 infected tomato leaves	Expression profiling by high throughput sequencing	Solanum lycopersicum	16	BW SRA Run Selector	jie Huang	Oct 01, 2022
GSE210149	A SlCLV3-SlWUS module regulates auxin and ethylene homeostasis in low light–induced tomato flower abscission	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	2	BW NARROWPEAK	lina cheng	Aug 03, 2022
GSE177487	Histone demethylase SlJMJ4 promotes leaf senescence via removal of H3K27 methylation of senescence-related genes in tomato	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	6	BW SRA Run Selector	Ding xiaochun	Apr 06, 2022
GSE148525	Histone demethylase SlJMJ7 Integrates DNA demethylation, ethylene signal and major ripening-related transcription factors in coordination of fruit ripening in tomato [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	18	BW SRA Run Selector	Ding xiaochun	Jul 10, 2021
GSE148527	Histone demethylase SlJMJ7 integrates DNA demethylation, ethylene signal and major ripening-related transcription factors in coordination of fruit ripening in tomato.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Solanum lycopersicum	24	BW	Ding xiaochun	Jul 10, 2021
GSE153080	Histone demethylase SlJMJ7 Integrates DNA demethylation, ethylene signal and major ripening-related transcription factors in coordination of fruit ripening in tomato	Methylation profiling by high throughput sequencing	Solanum lycopersicum	6	BW SRA Run Selector	Ding xiaochun	Jun 22, 2021
GSE149217	Atlas of chromatin accessibility and translatome of tomato and rice root tip cell types	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group Solanum lycopersicum	145	BED BW CSV SRA Run Selector	Siobhan Brady	Mar 24, 2021
GSE164297	Conserved pleiotropy of an ancient plant homeobox gene uncovered by cis-regulatory dissection	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	6	BED BW SRA Run Selector	Zachary Lippman	Jan 14, 2021
GSE142712	Histone demethylase SlJMJ6 promotes fruit ripening by removing H3K27 methylation of ripening-related genes in tomato [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	18	BW SRA Run Selector	Li Zhiwei	Apr 13, 2020