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| Status |
Public on Feb 23, 2024 |
| Title |
Combined analysis of ATAC-Seq and RNA-Seq reveal a potential role of WRKY34 in tomato response to cold stress [ATAC] |
| Organisms |
Solanum lycopersicum; Solanum habrochaites |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
To further clarify the differences in the potential regulatory mechanisms of cold tolerance between wild and cultivated tomatoes, we subjected cold-sensitive cultivated tomato (Solanum lycopersicum) Ailsa Craig (AC) and cold-tolerant wild tomato (S. habrochaites) LA1777 to cold stress for 6 h, and performed ATAC-Seq and RNA-Seq, respectively.
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| Overall design |
We subjected cold-sensitive cultivated tomato (Solanum lycopersicum) Ailsa Craig (AC) and cold-tolerant wild tomato (S. habrochaites) LA1777 to cold stress for 6 h, and performed ATAC-Seq.
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| Contributor(s) |
Guo M, Yang F, Zhu L, Zhou J |
| Citation(s) |
39107290 |
| |
| Submission date |
Feb 02, 2024 |
| Last update date |
Sep 05, 2024 |
| Contact name |
Mingyue Guo |
| E-mail(s) |
21916052@zju.edu.cn
|
| Phone |
+8618143465226
|
| Organization name |
浙江大学
|
| Street address |
浙江大学紫金港校区
|
| City |
杭州市 |
| State/province |
浙江省 |
| ZIP/Postal code |
310058 |
| Country |
China |
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| Platforms (2) |
| GPL27957 |
Illumina NovaSeq 6000 (Solanum lycopersicum) |
| GPL34161 |
Illumina NovaSeq 6000 (Solanum habrochaites) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA1072553 |
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