GEO Browser - GEO

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24 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Mus musculus		FPKM_TRACKING
GSE210817	Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	571	BEDGRAPH FPKM_TRACKING WIG	Xiao Ge	Oct 31, 2023
GSE210127	Nuclear m6A Reader YTHDC1 Promotes Muscle Stem Cell Activation/Proliferation by Regulating mRNA Splicing and Nuclear Export	Other Expression profiling by high throughput sequencing	Mus musculus	28	BED BW FPKM_TRACKING	QIANG SUN	Mar 20, 2023
GSE196574	Lockd promotes myoblast proliferation and skeletal muscle regeneration through binding with Dhx36 to facilitate unwinding of 5’UTR rG4 and translation of Anp32e mRNA	Expression profiling by high throughput sequencing Other	Mus musculus	8	FPKM_TRACKING	Yuwei ZHANG	Feb 14, 2022
GSE148958	Systematic Functional Characterization of Antisense eRNA of Protocadherin alpha HS5-1 Enhancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	274	BEDGRAPH FPKM_TRACKING HIC SRA Run Selector	Yuxiao Zhou	Oct 02, 2021
GSE142006	Pre-established chromatin interactions mediate acute transcriptional response to Epo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	26	BW FPKM_TRACKING TXT	Andrea Perreault	Sep 28, 2020
GSE138646	Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	790	BEDGRAPH FPKM_TRACKING WIG	Xiao Ge	Mar 02, 2020
GSE134529	CRISPR/Cas9/AAV9-sgRNA Mediated In Vivo Genome Editing Reveals the Indispensability of Myc During Muscle Stem Cells Activation by Remodeling the 3D Chromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	51	BEDGRAPH FPKM_TRACKING TAR ZIP	Yingzhe Ding	Sep 16, 2021
GSE120393	Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	107	BIGWIG BROADPEAK FPKM_TRACKING HIC NARROWPEAK TXT SRA Run Selector	Chia-Lin Wei	Jan 07, 2020
GSE112276	Transcriptome Mapping of Internal N7-methylguanosine Methylome in Mammalian mRNA	Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	104	BED FPKM_TRACKING TXT XLSX SRA Run Selector	Li-Sheng Zhang	Apr 26, 2019
GSE107919	Chromatin remodeler CHD8 in CNS myelination and remyelination	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus Rattus norvegicus	11	FPKM_TRACKING WIG SRA Run Selector	Richard Lu	Jun 20, 2018
GSE107434	Fragile X mental retardation protein modulates the stability of its m6A-marked messenger RNA targets	Expression profiling by high throughput sequencing Other	Mus musculus	8	FPKM_TRACKING TDF TXT SRA Run Selector	Feiran Zhang	Aug 09, 2018
GSE100339	The intestinal microbiota regulates body composition through NFIL3 and the circadian clock	Expression profiling by high throughput sequencing Other	Mus musculus mouse gut metagenome	32	FPKM_TRACKING TXT SRA Run Selector	Zheng Kuang	Sep 26, 2017
GSE99773	Transcriptome analysis of gene expression and single-nucleotide-resolution m6A sites in normal and mettl3 cKO testis samples	Expression profiling by high throughput sequencing Other	Mus musculus	10	BED FPKM_TRACKING	Qi Zhou	Aug 16, 2017
GSE97286	Ribosome profiling in wild-type and APOBEC1-deficient BMDMs	Expression profiling by high throughput sequencing Other	Mus musculus	24	FPKM_TRACKING TXT SRA Run Selector	F. Nina Papavasiliou	Dec 31, 2018
GSE94813	Sequencing the DNA and mRNA from the same single cell	Expression profiling by high throughput sequencing Other	Mus musculus	12	FPKM_TRACKING TXT SRA Run Selector	Zhoufang Li	Apr 11, 2017
GSE94098	FTO regulates adult neurogenesis through modulating the dynamics of N6-methyladenosine	Expression profiling by high throughput sequencing Other	Mus musculus	12	FPKM_TRACKING TDF TXT SRA Run Selector	Feiran Zhang	Apr 20, 2017
GSE90752	Mechanisms of transcription factor-mediated direct reprogramming of mouse embryonic stem cells to trophoblast stem-like cells	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	25	BED FPKM_TRACKING TXT SRA Run Selector	Jonghwan Kim	Jul 25, 2017
GSE90702	Identification of the embryonic germ cell Meioc-/- transcriptome, MEIOC targets in postnatal testis, and YTHDC2 targets in postnatal testis in mouse	Expression profiling by high throughput sequencing Other	Mus musculus	26	FPKM_TRACKING TXT	Maria M. Mikedis	Mar 22, 2017
GSE74055	Histone H3 lysine 4 monomethylation modulates longrange chromatin interactions at enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	153	BED BW FPKM_TRACKING TXT SRA Run Selector	Jian Yan	Jan 09, 2018
GSE73021	Transcription of mammalian cis-regulatory elements is restrained by actively enforced early termination [additional RNA]	Expression profiling by high throughput sequencing Other	Mus musculus	14	FPKM_TRACKING GTF TXT SRA Run Selector	Iros Barozzi	Nov 09, 2015