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332 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		MTX
GSE233706	Single Cell Multiome (ATAC + Gene Expression) sequencing of mouse cochlea at E12.5	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	MTX TSV	Lin Gan	May 31, 2024
GSE259409	A type 2 cytokine Fc–IL-4 revitalizes exhausted CD8+ T cells against cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	H5 MTX TBI TSV	Rong Fan	May 31, 2024
GSE262477	Progenitors of Distinct Lineages Shape the Diversity of Mature cDC2 [scMultiome-seq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	MTX TBI TSV	Marco Colonna	May 29, 2024
GSE243868	Single-Cell multi-omics reveals disrupted gene regulatory landscape and cell differentiation by Wilms tumor-associated ENL mutation in the developing kidney (snATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED MTX TSV	Liling Wan	May 27, 2024
GSE243871	Single-Cell multi-omics reveals disrupted gene regulatory landscape and cell differentiation by Wilms tumor-associated ENL mutation in the developing kidney	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	28	BED BW MTX TSV TXT	Liling Wan	May 27, 2024
GSE243509	TRPS1 maintains luminal progenitors in the mammary gland by repressing SRF/MRTF activity [03_scatac_shTRPS1_organoids]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED MTX TSV	Bjoern von Eyss	May 24, 2024
GSE243511	TRPS1 maintains luminal progenitors in the mammary gland by repressing SRF/MRTF activity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	65	BED BW MTX TSV	Bjoern von Eyss	May 24, 2024
GSE237884	Chromatin accessibility profile at single nuclei level of cells from mouse hippocampus	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	MTX TSV	Zheng Sun	May 22, 2024
GSE237925	Single-nucleus multi-omics dissection of physical exercise effects on neurocognition	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	8	MTX TSV	Zheng Sun	May 22, 2024
GSE229029	Deciphering lineage specification during early embryogenesis in mouse gastruloids using integrative multi-layered proteomics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	44	MTX NARROWPEAK TSV	Suzan Stelloo	May 21, 2024
GSE267982	In vivo interaction screening reveals liver-derived constraints to metastasis [Single Cell Multiome ATAC + Gene Expression]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CSV H5 MTX TSV	Costanza Borrelli	May 21, 2024
GSE253589	A Lactate-induced SREBF2-dependent genetic program drives an immunotolerant dendritic cell population during cancer progression [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED MTX TSV	Brent Hanks	May 13, 2024
GSE253593	A Lactate-induced SREBF2-dependent genetic program drives an immunotolerant dendritic cell population during cancer progression	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	15	JPG MTX TSV	Brent Hanks	May 13, 2024
GSE173952	Expression data from early and macroscopic HCC lesions isolated from the Rb family Triple Knock Out model	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	MTX TSV	Patrick Viatour	May 05, 2024
GSE214692	Dissecting developmental disorders caused by CTCF mutation at R567	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	71	BW CSV HIC MTX NARROWPEAK TSV	gongcheng Hu	May 05, 2024
GSE172335	Nucleotide depletion promotes cell fate transitions by inducing DNA replication stress	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	284	BW CSV MTX TXT	Brian Do	May 04, 2024
GSE246923	Opposing tumor cell-intrinsic and -extrinsic roles of the IRF1 transcription factor in anti-tumor immunity	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	49	BEDGRAPH MTX TSV TXT	Prabhat Kumar Purbey	May 01, 2024
GSE266089	Single-cell ATAC-seq analysis of mouse embryonic stem cells before and after Cohesin depletion	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BED H5 MTX TSV	PENG DONG	May 01, 2024
GSE208742	Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	64	BED BEDGRAPH BW MTX NARROWPEAK TAB TSV TXT XLSX SRA Run Selector	Boyan Bonev	Apr 30, 2024
GSE230765	Best practices for differential accessibility analysis in single-cell epigenomics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	MTX TXT	Alan Yue Yang Teo	Apr 30, 2024