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629 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					TDF
GSE36552	Tracing pluripotency of human early embryos and embryonic stem cells by single cell RNA-seq	Expression profiling by high throughput sequencing	Homo sapiens	124	BED TDF TXT SRA Run Selector	Mingyu Yang	Aug 10, 2013
GSE40472	Selective lymphoma cell killing by a PRC2 small molecule inhibitor (ChIP-Seq set 1)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BED TDF WIG SRA Run Selector	Barbara M Bryant	Dec 01, 2020
GSE40473	Selective lymphoma cell killing by a PRC2 small molecule inhibitor (ChIP-Seq set 2)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BED TDF WIG SRA Run Selector	Barbara M Bryant	Dec 01, 2020
GSE40476	Selective lymphoma cell killing by a PRC2 small molecule inhibitor	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens	26	BED CEL CHP TDF WIG	Barbara M Bryant	Dec 01, 2020
GSE40629	Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	2	TDF SRA Run Selector	Håvard Aanes	Nov 01, 2012
GSE42374	Histone modification analysis in TGFbeta/TNFalpha treated A549 spheroid cultures	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	36	BED TDF SRA Run Selector	Marcin Piotr Cieslik	Sep 12, 2013
GSE43579	Genome-wide maps of HSF1 and HSF2 binding sites in cycling and mitotic human K562 cells in optimal growth conditions and upon heat stress	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	14	TDF TXT SRA Run Selector	Anniina Vihervaara	Aug 04, 2013
GSE43949	Reconstruction of the dynamic regulatory network that controls Th17 cell differentiation by systematic perturbation in primary cells (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	TDF SRA Run Selector	Nir Yosef	Mar 07, 2013
GSE43970	Reconstruction of the dynamic regulatory network that controls Th17 cell differentiation by systematic perturbation in primary cells	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	120	CEL TDF TXT	Nir Yosef	Mar 07, 2013
GSE48314	CHD5 is required for neurogenesis and has a dual role in facilitating gene expression and Polycomb gene repression	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED TDF SRA Run Selector	Adrian P. Bracken	Aug 26, 2013
GSE49652	Enhancer landscape of mouse developing midbrain at 11.5 dpc embryos	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BEDGRAPH TDF SRA Run Selector	Takaho A. Endo	Jan 15, 2014
GSE49653	Genome-wide measurement of acetylated histone H3 in naïve cells under Treg-inducing conditon	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	TDF WIG SRA Run Selector	Takaho A. Endo	Nov 20, 2013
GSE49655	Commensal microbe-derived butyrate epigenetically induces colonic regulatory T cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	CEL TDF WIG	Takaho A. Endo	Nov 20, 2013
GSE50394	A mesodermal factor, T (Brachyury), specifies mouse germ cell fate by directly activating germline determinants	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	BED TDF WIG SRA Run Selector	Yukihiro Yabuta	Dec 11, 2013
GSE50590	A role for H3K4 mono-methylation in facultative heterochromatin assembly and partitioning of chromatin readers	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	33	BED TDF SRA Run Selector	Roy Blum	Mar 29, 2014
GSE52421	Genome-wide ChIP sequence analysis of KSHV-infected primary effusion lymphoma (PEL) cell line BCBL-1 and human umbilical vein endothelial TIVE-LTC cells.	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	18	TDF WIG SRA Run Selector	Rolf Renne	Oct 27, 2014
GSE53491	Phenotype specific analyses of p53 reveal distinct regulatory mechanism for chronically activated p53	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	27	BED TDF SRA Run Selector	Chandra Chilamakuri	Mar 02, 2015
GSE53495	Reciprocal interactions of human C10orf12 and C17orf96 with PRC2 revealed by BioTAP-XL crosslinking and affinity purification	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	14	TDF SRA Run Selector	Peter Kharchenko	Feb 01, 2014
GSE54263	ACF chromatin remodeling complex mediates stress-induced depressive-like behavior through nucleosome repositioning and transcriptional regulation.	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	15	BED TDF WIG SRA Run Selector	Eric Nestler	Sep 21, 2015
GSE54365	High-resolution mapping reveals a conserved, widespread, dynamic meiotically regulated mRNA methylation program	Other	Homo sapiens Mus musculus	76	BED TDF	Schraga Schwartz	Jul 18, 2014