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29 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Klebsiella pneumoniae		TXT
GSE216013	High-throughput transposon mutagenesis in the family Enterobacteriaceae reveals core essential genes and rapid turnover of essentiality	Other	Citrobacter rodentium Enterobacter cloacae Escherichia coli Klebsiella pneumoniae Salmonella enterica subsp. enterica serovar Enteritidis Salmonella enterica subsp. enterica serovar Typhimurium	13	TXT XLSX	Lars Barquist	Aug 20, 2024
GSE267531	The transcriptional response to low temperature is weakly conserved across Enterobacteriales	Expression profiling by high throughput sequencing	Citrobacter rodentium Enterobacter cloacae Escherichia coli Klebsiella pneumoniae Salmonella enterica Serratia marcescens	64	TXT	Daniel Stoebel	Jun 11, 2024
GSE249468	Intestinal carbapenem-resistant Klebsiella pneumoniae undergoes complex transcriptional reprogramming following immune activation	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	23	TXT	Clément David	Dec 07, 2023
GSE224709	Next Generation Sequencing Facilitates Quantitative Analysis of Klebsiella pneumoniae strain HKE9, HKE9-M-rpoS,HKE9-C-M-ropS	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	9	TXT	Bei Han	Nov 15, 2023
GSE233610	Use of a combined antibacterial synergy approach and the ANNOgesic tool to identify novel targets within the gene networks of multidrug-resistant Klebsiella pneumoniae	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	4	TXT	Dongeun Yong	Jul 01, 2023
GSE229867	Transcriptome analyses reveal antibiotic-resistant pathways in Klebsiella pneumonia	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	6	TXT	Guo qing Liu	Apr 18, 2023
GSE180237	Bacterial droplet-based single-cell RNA-seq reveals antibiotic-associated heterogeneous cellular states	Expression profiling by high throughput sequencing	Enterococcus faecalis Escherichia coli Klebsiella pneumoniae Pseudomonas aeruginosa	35	TSV TXT SRA Run Selector	Peijun Ma	Jan 27, 2023
GSE201383	Subinhibitory Concentrations of Antibiotics Alter the Response of Klebsiella pneumoniae to Components of Innate Host Defense	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	18	TXT	Dan Sturdevant	Oct 12, 2022
GSE123964	Dual RNA-seq on Klebsiella pneumoniae infection to human epithelial cells	Expression profiling by high throughput sequencing	Homo sapiens Klebsiella pneumoniae	5	TXT SRA Run Selector	Rieza Aprianto	Dec 14, 2021
GSE182766	Inappropriate use of antibiotics exacerbates inflammation through OMVs-induced pyroptosis in multidrug-resistant Klebsiella pneumoniae infection	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	6	TXT SRA Run Selector	Yanbing Ma	Aug 28, 2021
GSE152843	Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Klebsiella pneumoniae KPC2	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	12	GFF GTF TXT SRA Run Selector	Antibiotic Resistant Sepsis Pathogens Framework Initiative Bioplatforms Australia	Jul 01, 2021
GSE152844	Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Klebsiella pneumoniae AJ218	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	12	GFF GTF TXT SRA Run Selector	Antibiotic Resistant Sepsis Pathogens Framework Initiative Bioplatforms Australia	Jul 01, 2021
GSE146844	Analysis of the oxidative stress regulon identifies soxS as a genetic target for resistance reversal in multi-drug resistant Klebsiella pneumoniae	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	6	TXT SRA Run Selector	Sathesh K Sivasankaran	May 26, 2021
GSE152295	RNA Atlas of Bacterial Human Pathogens Uncovers Stress Dynamics Linked to Bacterial Infections	Expression profiling by high throughput sequencing	Achromobacter xylosoxidans Acinetobacter baumannii Aggregatibacter actinomycetemcomitans Borreliella burgdorferi Burkholderia pseudomallei Campylobacter jejuni Enterococcus faecalis Escherichia coli Francisella tularensis Haemophilus influenzae Helicobacter pylori Klebsiella pneumoniae Legionella pneumophila Listeria monocytogenes Mycobacterium tuberculosis Neisseria gonorrhoeae Neisseria meningitidis Pseudomonas aeruginosa Salmonella enterica Shigella flexneri Staphylococcus aureus subsp. aureus MRSA252 Staphylococcus aureus subsp. aureus MSSA476 Staphylococcus epidermidis Streptococcus agalactiae Streptococcus pneumoniae Streptococcus pyogenes Streptococcus suis Vibrio cholerae Yersinia pseudotuberculosis	1122	TXT SRA Run Selector	Kemal Avican	Apr 23, 2021
GSE132637	RNAseq transcriptome analysis of K. pneumoniae MS6671 and E. coli MS8345 treated with PBT2	Expression profiling by high throughput sequencing	Escherichia coli Klebsiella pneumoniae	12	TSV TXT SRA Run Selector	David Manuel Pereira De Oliveira	Jun 13, 2019
GSE115539	Network integrative genomic and transcriptomic analysis of carbapenem-resistant Klebsiella pneumoniae strains identifies genes for resistance and virulence	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	4	TXT SRA Run Selector	Muyoung Lee	Jun 10, 2018
GSE24688	Gene expression in Klebsiella pneumoniae	Expression profiling by array	Klebsiella pneumoniae Klebsiella pneumoniae subsp. pneumoniae MGH 78578	30	TXT	Alasdair Ivens	Dec 25, 2017
GSE69327	The YfgL lipoprotein is required for cell adhesion and invasion, type I fimbriae expression and virulence of Klebsiella pneomoniae infecion	Expression profiling by genome tiling array	Klebsiella pneumoniae	2	TXT XLS	Pei-Fang Hsieh	May 25, 2016
GSE71754	Transcriptional profiling of Klebsiella pneumoniae defines signatures for planktonic, sessile and biofilm-dispersed cells	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	15	FA TXT SRA Run Selector	Damien BALESTRINO	Mar 03, 2016
GSE62045	Sublethal Concentrations of Carbapenems Alter Cell Morphology and Genomic Expression of Klebsiella pneumoniae Biofilms	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	6	FASTA GFF TXT WIG	Tsute Chen	Jan 01, 2015