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17 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter			Enterococcus faecium
GSE161499	A dual T-box riboswitch in Enterococcus faecium binds two tRNAs	Expression profiling by high throughput sequencing	Enterococcus faecium	8		TXT SRA Run Selector	Vincent Cattoir	Nov 16, 2020
GSE122256	Detection of carbohydrate-active enzyme genes in the rumen of young lambs	Genome variation profiling by array	Acetivibrio clariflavus Acetivibrio thermocellus Agathobacter rectalis Bacteroides fragilis Bacteroides ovatus Bacteroides sp. Bacteroides thetaiotaomicron Bacteroides xylanisolvens Bifidobacterium adolescentis Bifidobacterium animalis Bifidobacterium longum Butyrivibrio fibrisolvens Butyrivibrio hungatei Cellulomonas fimi Cellulomonas flavigena Cellulosilyticum ruminicola Clostridioides difficile Clostridium acetobutylicum Clostridium beijerinckii Clostridium cellulovorans Enterobacter sp. Enterococcus faecium Epidinium caudatum Epidinium ecaudatum Eudiplodinium maggii Fibrobacter intestinalis Fibrobacter succinogenes Lachnospira eligens Lactococcus lactis Levilactobacillus brevis Limosilactobacillus fermentum Microbiota Neocallimastix frontalis Neocallimastix patriciarum Orpinomyces joyonii Orpinomyces sp. Piromyces communis Piromyces rhizinflatus Piromyces sp. Piromyces sp. 'equi' Polyplastron multivesiculatum Pseudobacteroides cellulosolvens Pseudobutyrivibrio xylanivorans Roseburia hominis Roseburia intestinalis Ruminiclostridium cellulolyticum Ruminococcus albus Ruminococcus champanellensis Ruminococcus flavefaciens Ruminococcus sp. Segatella bryantii Selenomonas ruminantium Xylanibacter ruminicola [Eubacterium] cellulosolvens uncultured Neocallimastigales	6		TXT	Evelyne Forano	Oct 01, 2019
GSE121555	RNASeq analysis of untreated versus treated	Expression profiling by high throughput sequencing	Enterococcus faecium Staphylococcus aureus Streptococcus pyogenes	18		XLSX SRA Run Selector	Lisa Bohlmann	Oct 23, 2018
GSE107550	The FibroChip, a functional DNA microarray to monitor cellulolysis and hemicellulolysis activities of rumen microbiota	Expression profiling by array Other	Acetivibrio clariflavus Acetivibrio thermocellus Agathobacter rectalis Bacteroides fragilis Bacteroides ovatus Bacteroides sp. Bacteroides thetaiotaomicron Bacteroides xylanisolvens Bacteroides xylanisolvens XB1A Bifidobacterium adolescentis Bifidobacterium animalis Bifidobacterium longum Butyrivibrio fibrisolvens Butyrivibrio hungatei Cellulomonas fimi Cellulomonas flavigena Cellulosilyticum ruminicola Clostridioides difficile Clostridium acetobutylicum Clostridium beijerinckii Clostridium cellulovorans Enterobacter sp. Enterococcus faecium Epidinium caudatum Epidinium ecaudatum Escherichia coli K-12 Eudiplodinium maggii Fibrobacter intestinalis Fibrobacter succinogenes Fibrobacter succinogenes subsp. succinogenes S85 Lachnospira eligens Lactococcus lactis Levilactobacillus brevis Limosilactobacillus fermentum Neocallimastix frontalis Neocallimastix patriciarum Orpinomyces joyonii Orpinomyces sp. Piromyces communis Piromyces rhizinflatus Piromyces sp. Piromyces sp. 'equi' Polyplastron multivesiculatum Pseudobacteroides cellulosolvens Pseudobutyrivibrio xylanivorans Roseburia hominis Roseburia intestinalis Ruminiclostridium cellulolyticum Ruminococcus albus Ruminococcus champanellensis Ruminococcus flavefaciens Ruminococcus sp. Segatella bryantii Selenomonas ruminantium Xylanibacter ruminicola [Eubacterium] cellulosolvens bovine gut metagenome uncultured Neocallimastigales	14		TXT	Sophie Comtet-Marre	Dec 01, 2017
GSE100091	Unexpected bactericidal activity of caspofungin against Enterococcus faecium	Expression profiling by high throughput sequencing	Enterococcus faecium	4		TXT SRA Run Selector	Vincent Cattoir	Jun 16, 2017
GSE77436	Emergence of cephalosporin resitance in cephalosporin-sensitive class A penicillin binding protein mutants in Enterococcus faecium	Expression profiling by array	Enterococcus faecium	6		CEL CHP	Paul Dunman	Feb 19, 2016
GSE59190	Defining the mobilome in clinically important lineages of Enterococcus faecium and Enterococcus faecalis	Genome variation profiling by array	Enterococcus faecalis Enterococcus faecium	63		TXT	Christopher Fenton	Jul 08, 2014
GSE57245	Identification of Gram-positive bacteria using BC-GP assay	Other	Bacillus licheniformis Corynebacterium afermentans Corynebacterium striatum Enterococcus faecalis Enterococcus faecium Enterococcus gallinarum Escherichia coli Klebsiella pneumoniae Leuconostoc lactis Listeria Listeria monocytogenes Micrococcus Micrococcus luteus Staphylococcus Staphylococcus aureus Staphylococcus capitis Staphylococcus caprae Staphylococcus epidermidis Staphylococcus haemolyticus Staphylococcus hominis Staphylococcus lugdunensis Staphylococcus saprophyticus Staphylococcus simulans Streptococcus Streptococcus agalactiae Streptococcus anginosus Streptococcus anginosus group Streptococcus australis Streptococcus constellatus Streptococcus dysgalactiae Streptococcus gallolyticus Streptococcus gordonii Streptococcus mitis Streptococcus parasanguinis Streptococcus pneumoniae Streptococcus pyogenes Streptococcus salivarius Streptococcus thermophilus	104		TXT	Seon Young Kim	May 30, 2014
GSE23945	Lactobacillus plantarum IMDO 130201, a wheat sourdough isolate, adapts to growth in wheat sourdough simulation medium at different pH values through differential gene expression	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	10		TXT	Rekin's Janky	Aug 01, 2011
GSE15686	Meta-transcriptome analysis of a natural wheat sourdough ecosystem during a 10-day spontaneous laboratory fermentation	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	9		TXT	Rekin's Janky	Jul 07, 2010
GSE15691	Meta-transcriptome analysis of a natural spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	7		TXT	Rekin's Janky	Jul 07, 2010
GSE15692	Meta-transcriptome analysis of a natural spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation.	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	9		TXT	Rekin's Janky	Jul 07, 2010
GSE15693	Meta-transcriptome analysis of a natural wheat sourdough ecosystem during a 10-day spontaneous, laboratory fermentation	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	9		TXT	Rekin's Janky	Jul 07, 2010
GSE15803	Analysis of natural wheat and spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	34		TXT	Rekin's Janky	Jul 07, 2010
GSE9082	DNA validation of LAB 2k v2	Genome variation profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	40		TXT	Rekin's Janky	Oct 20, 2009
GSE9140	RNA validation of LAB 2k v2	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	20		TXT	Rekin's Janky	Oct 20, 2009
GSE17221	Rapid Identification of Bacterial Pathogens using a PCR- and Microarray-Based Assay	Other	Acinetobacter baumannii Enterococcus faecalis Enterococcus faecium Haemophilus influenzae Homo sapiens Klebsiella pneumoniae Listeria monocytogenes Neisseria meningitidis Staphylococcus aureus Staphylococcus epidermidis Streptococcus agalactiae Streptococcus pneumoniae Streptococcus pyogenes unidentified	195		TXT	Anna-Kaarina Jarvinen	Aug 31, 2009