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16 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter			Lacticaseibacillus casei
GSE209925	Interactions with Commensal or Non-commensal Streptococci Alter Streptococcus mutans Transcriptome and Behaviors	Expression profiling by high throughput sequencing	Corynebacterium matruchotii Lacticaseibacillus casei Streptococcus gordonii Streptococcus mutans Streptococcus mutans UA159 Streptococcus oralis Streptococcus sanguinis Streptococcus sobrinus	33		CSV XLSX	Justin Ray Kaspar	Aug 03, 2022
GSE166930	High-throughput sequencing of Lactobacillus casei BL23 sRNAs	Expression profiling by high throughput sequencing	Lacticaseibacillus casei	9		TSV SRA Run Selector	Kotryna Kvederaviciute	May 20, 2021
GSE166932	Methyltransferase-directed orthogonal tagging and sequencing of miRNAs and bacterial small RNAs in probiotic Lactobacillus casei	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Lacticaseibacillus casei synthetic construct	17			Kotryna Kvederaviciute	May 20, 2021
GSE25448	Comparison of the response to bile of Lactobacillus casei BL23 and its derivative strain TC01	Expression profiling by array	Lacticaseibacillus casei Lacticaseibacillus paracasei ATCC 334	12		TXT	Manuel Zúñiga	Oct 10, 2012
GSE33047	Response to bile of Lactobacillus casei BL23	Expression profiling by array	Lacticaseibacillus casei Lacticaseibacillus paracasei ATCC 334	6		TXT	Manuel Zúñiga	Oct 20, 2011
GSE23945	Lactobacillus plantarum IMDO 130201, a wheat sourdough isolate, adapts to growth in wheat sourdough simulation medium at different pH values through differential gene expression	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	10		TXT	Rekin's Janky	Aug 01, 2011
GSE25415	Transcription analysis of wild-type and chuR Bacteroides thetaiotaomicron genes in the mouse cecum	Expression profiling by array	Agathobacter rectalis Bacteroides thetaiotaomicron Bifidobacterium animalis Bifidobacterium longum Lacticaseibacillus casei Lactobacillus delbrueckii Streptococcus thermophilus	12		CEL	Eric Charles Martens	Jan 01, 2011
GSE15686	Meta-transcriptome analysis of a natural wheat sourdough ecosystem during a 10-day spontaneous laboratory fermentation	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	9		TXT	Rekin's Janky	Jul 07, 2010
GSE15691	Meta-transcriptome analysis of a natural spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	7		TXT	Rekin's Janky	Jul 07, 2010
GSE15692	Meta-transcriptome analysis of a natural spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation.	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	9		TXT	Rekin's Janky	Jul 07, 2010
GSE15693	Meta-transcriptome analysis of a natural wheat sourdough ecosystem during a 10-day spontaneous, laboratory fermentation	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	9		TXT	Rekin's Janky	Jul 07, 2010
GSE15803	Analysis of natural wheat and spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	34		TXT	Rekin's Janky	Jul 07, 2010
GSE9082	DNA validation of LAB 2k v2	Genome variation profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	40		TXT	Rekin's Janky	Oct 20, 2009
GSE9140	RNA validation of LAB 2k v2	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	20		TXT	Rekin's Janky	Oct 20, 2009
GSE15030	Comparative genome hybridization for Lactobacillus casei	Genome variation profiling by array	Lacticaseibacillus casei Lactobacillus helveticus	22		CEL	Hui Cai	Mar 17, 2009
GSE7840	Oligonucleotide microarrays for the detection and identification of viable beer spoilage bacteria	Expression profiling by array	Lacticaseibacillus casei Levilactobacillus brevis Loigolactobacillus coryniformis Megasphaera cerevisiae Pectinatus cerevisiiphilus Pectinatus frisingensis Pediococcus damnosus Pediococcus inopinatus Schleiferilactobacillus perolens	12		GPR	Daniel Gilbert Weber	May 23, 2007