GEO Browser - GEO

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53 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Physcomitrium patens
GSE5103	Small RNAs from the moss Physcomitrella patens	Non-coding RNA profiling by high throughput sequencing	Physcomitrium patens	3		Michael J Axtell	Aug 15, 2006
GSE12468	Small RNAs from dcl3 and rdr6 mutants of Physcomitrella	Non-coding RNA profiling by high throughput sequencing	Physcomitrium patens	6		Michael J Axtell	Dec 19, 2008
GSE16367	The Physcomitrella Degradome	Expression profiling by high throughput sequencing	Physcomitrium patens	1	SRA Run Selector	Michael J Axtell	Oct 01, 2009
GSE18466	Small RNAs in the Physcomitrella dcl4 mutant	Non-coding RNA profiling by high throughput sequencing	Physcomitrium patens	2	FA SRA Run Selector	Michael J Axtell	Apr 01, 2012
GSE19768	UV-B regulation of microRNAs in maize	Non-coding RNA profiling by array	Arabidopsis thaliana Brassica napus Glycine max Gossypium hirsutum Medicago truncatula Oryza sativa Physcomitrium patens Pinus taeda Populus trichocarpa Saccharum officinarum Selaginella moellendorffii Solanum lycopersicum Sorghum bicolor Triticum aestivum Vitis vinifera Zea mays	2	TXT	Paula Casati	Oct 31, 2013
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Postia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE20263	Small RNAs in different tissues and phloem of oilseed rape under nutrient stress conditions	Non-coding RNA profiling by array	Arabidopsis thaliana Brassica napus Brassica oleracea Brassica rapa Glycine max Medicago truncatula Oryza sativa Physcomitrium patens Pinus taeda Populus trichocarpa Saccharum officinarum Selaginella moellendorffii Sorghum bicolor Triticum aestivum Vitis vinifera Zea mays	10	TXT	Anja Buhtz	Feb 24, 2010
GSE25237	The DNA damage response transcriptome of the moss Physcomitrella patens	Expression profiling by high throughput sequencing	Physcomitrium patens	2	SAM SRA Run Selector	John William Whitaker	Nov 10, 2010
GSE31373	miRNA expression data from low nitrate culture in leaf and root of maize	Non-coding RNA profiling by array	Arabidopsis thaliana Glycine max Medicago truncatula Oryza sativa Physcomitrium patens Populus trichocarpa Saccharum officinarum Sorghum bicolor Zea mays	12		Chuanxiao Xie	Sep 01, 2011
GSE31492	miRNA expression data from low nitrate cultures in maize	Non-coding RNA profiling by array	Arabidopsis thaliana Glycine max Medicago truncatula Oryza sativa Physcomitrium patens Populus trichocarpa Saccharum officinarum Sorghum bicolor Zea mays Zea mays subsp. mays synthetic construct	21	CEL	Chuanxiao Xie	Sep 01, 2011
GSE32928	Genome-wide transcriptomic analysis of the sporophyte of the moss Physcomitrella patens	Expression profiling by array	Physcomitrium patens	8	TXT	Martin-Timothy O'Donoghue	Jul 29, 2013
GSE33279	Genome-wide transcriptome analysis of gametophyte development in Physcomitrella patens	Expression profiling by high throughput sequencing	Physcomitrium patens	6	TXT SRA Run Selector	Lihong Xiao	Dec 20, 2011
GSE35606	miR-206 integrates multiple components of differentiation pathways to control the transition from growth to differentiation in rhabdomyosarcoma cells (miRNA)	Non-coding RNA profiling by array	Anopheles gambiae Apis mellifera Arabidopsis thaliana Ateles geoffroyi Betapolyomavirus macacae Bombyx mori Bos taurus Caenorhabditis briggsae Caenorhabditis elegans Canis lupus familiaris Danio rerio Drosophila melanogaster Drosophila pseudoobscura Gallid alphaherpesvirus 2 Gallus gallus Glycine max Gorilla gorilla Homo sapiens Human betaherpesvirus 5 Human gammaherpesvirus 8 Lagothrix lagotricha Lemur catta Macaca mulatta Macaca nemestrina Macacine gammaherpesvirus 4 Medicago truncatula Monodelphis domestica Murid gammaherpesvirus 4 Mus musculus Oryza sativa Ovis aries Pan paniscus Pan troglodytes Physcomitrium patens Pongo pygmaeus Populus trichocarpa Rattus norvegicus Saccharum officinarum Saguinus labiatus Schmidtea mediterranea Sorghum bicolor Sus scrofa Takifugu rubripes Tetraodon nigroviridis Xenopus laevis Xenopus tropicalis Zea mays human gammaherpesvirus 4	4	GPR	Janet M. Young	Apr 02, 2012
GSE35921	miR-206 integrates multiple components of differentiation pathways to control the transition from growth to differentiation in rhabdomyosarcoma cells	Expression profiling by array Non-coding RNA profiling by array	Anopheles gambiae Apis mellifera Arabidopsis thaliana Ateles geoffroyi Betapolyomavirus macacae Bombyx mori Bos taurus Caenorhabditis briggsae Caenorhabditis elegans Canis lupus familiaris Danio rerio Drosophila melanogaster Drosophila pseudoobscura Gallid alphaherpesvirus 2 Gallus gallus Glycine max Gorilla gorilla Homo sapiens Human betaherpesvirus 5 Human gammaherpesvirus 8 Lagothrix lagotricha Lemur catta Macaca mulatta Macaca nemestrina Macacine gammaherpesvirus 4 Medicago truncatula Monodelphis domestica Murid gammaherpesvirus 4 Mus musculus Oryza sativa Ovis aries Pan paniscus Pan troglodytes Physcomitrium patens Pongo pygmaeus Populus trichocarpa Rattus norvegicus Saccharum officinarum Saguinus labiatus Schmidtea mediterranea Sorghum bicolor Sus scrofa Takifugu rubripes Tetraodon nigroviridis Xenopus laevis Xenopus tropicalis Zea mays human gammaherpesvirus 4	16	GPR	Janet M. Young	Apr 02, 2012
GSE36117	Transcriptome of Protoplasts Reprogrammed into Stem Cells in Physcomitrella patens	Expression profiling by high throughput sequencing	Physcomitrium patens	4	TXT SRA Run Selector	Lihong Xiao	Feb 28, 2015
GSE36274	mRNA-seq of Physcomitrella protonema responding to 1 hr red light in wild type and the phytochrome-deficient mutant	Expression profiling by high throughput sequencing	Physcomitrium patens	4	TXT SRA Run Selector	Shih-Long Tu	May 08, 2012
GSE36301	Analysis of transcriptome in moss Physcomitrella patens CNGCb null mutant at 25 and 34 degrees C for 30 minutes [Unpublished data]	Expression profiling by array	Physcomitrium patens	8	TXT	Andrija Finka	Mar 06, 2012
GSE37694	Genome-wide expression profiling of PpABI1 disruptants	Expression profiling by array	Physcomitrium patens	26	TXT	Kenji KOMATSU	Jul 31, 2013
GSE44900	Small RNA genes of Physcomitrella patens	Non-coding RNA profiling by high throughput sequencing	Physcomitrium patens	10	TXT SRA Run Selector	Michael J Axtell	Jun 30, 2015
GSE51416	small RNA-seq of Physcomitrella patens rdr mutants	Non-coding RNA profiling by high throughput sequencing	Physcomitrium patens	3	TXT SRA Run Selector	Michael J Axtell	Jun 30, 2015