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373 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Escherichia coli str. K-12 substr. MG1655
GSE129281	rG4-seq for P. aeruginosa and E. coli	Other	Escherichia coli str. K-12 substr. MG1655 Pseudomonas aeruginosa PAO1	8	BED SRA Run Selector	Xin DENG	Dec 31, 2019
GSE221667	exoRNA-mediated Cell-to-cell Communications in E. coli are Supported by Dps Mobility	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Escherichia coli str. K-12 substr. MG1655	10	XLSX	Konstantin S. Shavkunov	Aug 30, 2023
GSE173614	Virus-Host interaction of E. coli DksA-deficient cells infected by phage P1vir	Expression profiling by high throughput sequencing	Escherichia coli str. K-12 substr. MG1655	18	CSV TXT SRA Run Selector	Grzegorz M. Cech	Apr 30, 2021
GSE17036	Variation in the Genomic islands of porcine enteropathogenic E. coli strains of serogroup O45 revealed by CGH and PCR.	Genome variation profiling by array	Escherichia coli Escherichia coli O157:H7 Escherichia coli O157:H7 str. EDL933 Escherichia coli O157:H7 str. Sakai Escherichia coli str. K-12 substr. MG1655	12	GPR	Chad R Laing	Jul 11, 2009
GSE143855	Validated transcriptional regulatory roles for five two-component systems in E. coli (RNA-seq dataset)	Expression profiling by high throughput sequencing	Escherichia coli str. K-12 substr. MG1655	32	CSV SRA Run Selector	Bernhard O. Palsson	Oct 21, 2020
GSE143851	Validated transcriptional regulatory roles for five two-component systems in E. coli (ChIP-exo dataset)	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli str. K-12 substr. MG1655	10	GFF SRA Run Selector	Bernhard O. Palsson	Oct 21, 2020
GSE143856	Validated transcriptional regulatory roles for five two-component systems in E. coli	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Escherichia coli str. K-12 substr. MG1655	42	GFF	Bernhard O. Palsson	Oct 21, 2020
GSE51611	Unravelling osmotololerance in Escherichia coli using a pseudosexual model system	Expression profiling by array	Escherichia coli Escherichia coli BW25113 Escherichia coli CFT073 Escherichia coli O157:H7 str. EDL933 Escherichia coli O157:H7 str. Sakai Escherichia coli str. K-12 substr. MG1655	12	GPR	James Winkler	Apr 16, 2014
GSE46118	UV-crosslinking and high throughput sequencing of cDNAs (CRAC) of the RNA chaperone Hfq in enterohaemorhaggic E. coli	Expression profiling by high throughput sequencing	Escherichia coli O157:H7 str. Sakai Escherichia coli str. K-12 substr. MG1655	11	GTF SRA Run Selector	Jai Justin Tree	May 22, 2014
GSE13829	UV treated Escherichia coli reveals a high number of differentially expressed regions and many novel transcripts	Expression profiling by genome tiling array	Escherichia coli str. K-12 substr. MG1655	10	CEL	Gard Thomassen	Aug 18, 2009
GSE135906	Translational initiation in E. coli occurs at the correct sites genome-wide in the absence of mRNA-rRNA base-pairing	Expression profiling by high throughput sequencing Other	Escherichia coli str. K-12 substr. MG1655	41	SRA Run Selector	Allen R Buskirk	Feb 21, 2020
GSE90056	Translation efficiency is maintained during heat shock in Escherichia coli	Expression profiling by high throughput sequencing	Escherichia coli str. K-12 substr. MG1655	36	TXT SRA Run Selector	Evan Thomas Powers	Nov 19, 2016
GSE122870	Translation complex profiling for bacteria [Ribo-seq]	Other	Escherichia coli str. K-12 substr. MG1655	6	TXT SRA Run Selector	B Anand	Sep 16, 2019
GSE59468	Transfer of Non-coding DNA Drives Regulatory Rewiring in Bacteria	Expression profiling by high throughput sequencing	Escherichia coli CFT073 Escherichia coli str. K-12 substr. MG1655	12	TXT SRA Run Selector	Yaara Oren	Nov 04, 2014
GSE73640	Transcriptomic differences between E. coli BL21 and K-12 MG1655 during n-heptanoic acid stress	Expression profiling by array	Escherichia coli Escherichia coli BL21(DE3) Escherichia coli str. K-12 substr. MG1655	4	TXT	Ji-Min Woo	Oct 11, 2016
GSE215300	Transcriptomic data of Escherichia coli K-12 control and antibiotic-treated cultures	Expression profiling by high throughput sequencing	Escherichia coli str. K-12 substr. MG1655	36	PDF XLSX	Alexander S Balkin	Jan 21, 2023
GSE85807	Transcriptomic changes of Escherichia coli expressing BnTR1 at normal and heat stress conditions	Expression profiling by array	Escherichia coli Escherichia coli CFT073 Escherichia coli O157:H7 str. EDL933 Escherichia coli O157:H7 str. Sakai Escherichia coli str. K-12 substr. MG1655	12	TXT	Yulong Niu	Aug 19, 2016
GSE206196	Transcriptomic analysis of homoserine-evolved MG1655 strain (wild type) and of homoserine -treated wild type, mutant deleted for thrL and mutant bearing thrL* allele	Expression profiling by array	Escherichia coli Escherichia coli CFT073 Escherichia coli O157:H7 str. EDL933 Escherichia coli O157:H7 str. Sakai Escherichia coli str. K-12 substr. MG1655	24	TXT XLSX	JEAN MARIE FRANCOIS	Jun 18, 2022
GSE69265	Transcriptomic analysis of glycolaldehyde-treated wild type cells and a synthetic strain	Expression profiling by array	Escherichia coli Escherichia coli CFT073 Escherichia coli O157:H7 str. EDL933 Escherichia coli O157:H7 str. Sakai Escherichia coli str. K-12 substr. MG1655	9	TXT	Ceren Alkim	May 27, 2015
GSE53140	Transcriptomic analysis of carboxylic acid challenge in Escherichia coli: beyond membrane damage	Expression profiling by array	Escherichia coli Escherichia coli str. K-12 substr. MG1655	5	CEL	Laura Jarboe	Dec 10, 2013