GEO Browser - GEO

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19 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL21087
GSE192588	Transcriptomic analysis of resistant (BR2655) and susceptible (HR12) rice cultivars after infection with rice blast fungus M. Oryzae (M036)	Expression profiling by high throughput sequencing	Oryza sativa	4	TXT	Chandrakanth R	Jun 01, 2024
GSE260671	Bulk RNA sequencing data of rice root sections for Single-cell RNA-seq developmental stage annotation	Expression profiling by high throughput sequencing	Oryza sativa	30	COUNTS XLSX	Philip Benfey	Mar 03, 2024
GSE207402	OsFD4 promotes the rice floral transition via florigen activation complex formation in the shoot apical meristem	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	4	NARROWPEAK	Andrea Gallavotti	Jul 10, 2022
GSE115056	sRNA-seq datasets of OsRDR3 transgenic plants.	Non-coding RNA profiling by high throughput sequencing	Oryza sativa	6	TXT SRA Run Selector	Shivaprasad Padubidri V.	Jan 31, 2021
GSE165583	The Xa7 Resistance Gene Guards the Susceptibility Gene SWEET14 of Rice Against Exploitation by Bacterial Blight Pathogen	Other	Oryza sativa	5	TAB TXT SRA Run Selector	R. Taylor Raborn	Jan 27, 2021
GSE130064	DNA hypomethylation confers enhanced immunity against parasitic nematodes in plants	Methylation profiling by high throughput sequencing	Oryza sativa	6	COV SRA Run Selector	Jeroen Galle	Jul 07, 2020
GSE151043	Diverse panicle architecture results from various combinations of Prl5/GA20ox4 and Pbl6/APO1 alleles	Expression profiling by high throughput sequencing	Oryza sativa	12	CSV SRA Run Selector	Tokunori Hobo	May 23, 2020
GSE129979	Antibody-free enzyme-assisted chemical approach for detection of N6-methyladenosine	Methylation profiling by high throughput sequencing	Homo sapiens Oryza sativa	16	BW SRA Run Selector	Ye Wang	Apr 22, 2020
GSE131641	CircRNAs function as a new layer of regulation in rice-Magnaporthe oryzae interaction	Expression profiling by high throughput sequencing	Oryza sativa	18	TXT SRA Run Selector	Dong Chen	Jan 21, 2020
GSE128434	The prevalence, evolution and chromatin signatures of plant regulatory elements	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Asparagus officinalis Brachypodium distachyon Eutrema salsugineum Glycine max Hordeum vulgare Oryza sativa Phaseolus vulgaris Populus trichocarpa Setaria viridis Sorghum bicolor Spirodela polyrhiza Zea mays	170	BW SRA Run Selector	Robert J Schmitz	Sep 19, 2019
GSE135498	Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA	Other	Capsaspora owczarzaki Homo sapiens Mus musculus Nematostella vectensis Neurospora crassa Oryza sativa	40	BIGWIG BW TXT SRA Run Selector	Christopher Benner	Sep 16, 2019
GSE111438	Rice domestication-associated miRNA 397 targets laccases to facilitate lignin biosynthesis and yield-related traits [RNA-seq]	Expression profiling by high throughput sequencing	Oryza nivara Oryza rufipogon Oryza sativa Oryza sativa Indica Group Oryza sativa aus subgroup	20	TXT SRA Run Selector	Shivaprasad Padubidri V.	Apr 25, 2018
GSE111440	Rice domestication-associated miRNA 397 targets laccases to facilitate lignin biosynthesis and yield-related traits [ncRNA-seq]	Non-coding RNA profiling by high throughput sequencing	Oryza nivara Oryza rufipogon Oryza sativa Oryza sativa Indica Group Oryza sativa aus subgroup	30	TXT SRA Run Selector	Shivaprasad Padubidri V.	Apr 25, 2018
GSE111472	Rice domestication-associated miRNA 397 targets laccases to facilitate lignin biosynthesis and yield-related traits	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza nivara Oryza rufipogon Oryza sativa Oryza sativa Indica Group Oryza sativa aus subgroup	50	TXT	Shivaprasad Padubidri V.	Apr 25, 2018
GSE107904	Oryza sativa Argonaute 18 is a regulator of male sterility (sRNA-Seq)	Non-coding RNA profiling by high throughput sequencing	Oryza sativa	18	TXT SRA Run Selector	Shivaprasad Padubidri V.	Jan 15, 2018
GSE74497	Integrative analysis of microRNAome and transcriptome elucidates the response of susceptible rice plants to rice stripe virus RSV (RNA-Seq)	Expression profiling by high throughput sequencing	Oryza sativa	6	TXT SRA Run Selector	Heng-Mu Zhang	Sep 01, 2017
GSE74499	Integrative analysis of microRNAome and transcriptome elucidates the response of susceptible rice plants to rice stripe virus RSV	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa	12		Heng-Mu Zhang	Sep 01, 2017
GSE101482	ATAC-seq profiling of open chromatin in the root tips of four plant species (Arabidopsis thaliana, Medicago truncatula, Solanum lycopersicum, and Oryza sativa) and two Arabidopsis thaliana cell types (root hair and non-hair epidermal cells)	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Medicago truncatula Oryza sativa Solanum lycopersicum	15	BED SRA Run Selector	Roger B Deal	Jul 26, 2017
GSE89789	DNA demethylation is initiated in the central cells of Arabidopsis and rice	Methylation profiling by high throughput sequencing	Arabidopsis thaliana Oryza sativa	5	GFF SRA Run Selector	Xiaoqi Feng	Nov 30, 2016