GEO Browser - GEO

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1103 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Mus musculus		NARROWPEAK
GSE63286	Kdm5b depletion in embryonic stem cells does not induce intragenic promoters or affect transcription [ChIP-Seq]	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	NARROWPEAK TXT SRA Run Selector	Andrew Johnston	Mar 21, 2020
GSE111902	Compendium of CD8+ T cell Data	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	67	BROADPEAK BW NARROWPEAK TSV TXT SRA Run Selector	Robert Anthony Amezquita	Mar 17, 2018
GSE161377	DBX2 REGULATION IN LIMBS SUGGESTS INTER-TAD SHARING OF ENHANCERS [ChIP-Seq reanalysis]	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		BROADPEAK BW NARROWPEAK TXT	Lucille Lopez-Delisle	Jan 23, 2021
GSE165495	Mesomelic Dysplasias Associated With The HOXD Locus Are Caused By Regulatory Reallocations	Third-party reanalysis Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	23	BW COOL NARROWPEAK TAR TXT	Lucille Lopez-Delisle	Jul 20, 2021
GSE165761	Mesomelic Dysplasias Associated With The HOXD Locus Are Caused By Regulatory Reallocations [ChIP-Seq]	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		BW NARROWPEAK	Lucille Lopez-Delisle	Jul 20, 2021
GSE231492	Dimeric G-quadruplex motifs-induced NFRs determine strong replication origins in vertebrates	Third-party reanalysis Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Gallus gallus Homo sapiens Mus musculus	14	BED BIGWIG NARROWPEAK	Caroline Tonnerre-Doncarli	Jul 19, 2023
GSE250367	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS [ChIP-seq]	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Mus musculus	3	BW NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE51334	DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions	Other	Homo sapiens Mus musculus	993	BAM BED BIGWIG BROADPEAK NARROWPEAK PAIR TSV TXT	ENCODE DCC	Nov 20, 2014
GSE51341	Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence	Other	Homo sapiens Mus musculus	32	BAM BED BIGWIG BROADPEAK NARROWPEAK TXT WIG	ENCODE DCC	Nov 19, 2014
GSE55581	Diet-induced chromatin remodeling in mice livers	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	20	BED BEDPE DIFF NARROWPEAK SRA Run Selector	Amy Leung	Jul 17, 2014
GSE70226	rDNA chromatin interactions in the MYC-driven Eµ-Myc transgenic mouse model of B-cell lymphoma	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	25	CSV NARROWPEAK TXT	Jeannine Diesch	Feb 06, 2019
GSE76420	LncRNA DINO guides DNA damage signaling	Other Expression profiling by high throughput sequencing Expression profiling by array	Homo sapiens Mus musculus	56	BED NARROWPEAK	Adam Schmitt	Dec 30, 2015
GSE76481	Cell-of-origin specific 3D genome structure acquired during somatic cell reprogramming	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Mus musculus	85	NARROWPEAK TXT	Elzo de Wit	Mar 01, 2016
GSE78873	A long noncoding RNA lincRNA-EPS acts as a transcriptional brake to restrain inflammation	Other	Mus musculus	12	NARROWPEAK SRA Run Selector	Howard Chang	May 08, 2016
GSE79703	A tissue checkpoint regulates type 2 immunity	Other	Mus musculus	15	NARROWPEAK SRA Run Selector	Rachel Gate	Oct 17, 2016
GSE80511	A multi-step transcriptional and chromatin cascade underlies motor neuron programming (ATAC-Seq)	Other	Mus musculus	4	BW NARROWPEAK SRA Run Selector	Shaun Mahony	Dec 07, 2016
GSE81203	Polarized regulatory landscape and Wnt responsiveness underlie Hox activation in embryos	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	65	BEDGRAPH BW NARROWPEAK WIG SRA Run Selector	Jacqueline Deschamps	Sep 16, 2016
GSE85155	DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome [uvCLAP CLIP-seq]	Other Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	52	BED BIGWIG NARROWPEAK SRA Run Selector	Asifa Akhtar	Mar 28, 2017
GSE85185	YY1 and CTCF Orchestrate a 3D Chromatin Looping Switch during Early Neural Lineage Commitment	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BED NARROWPEAK TXT SRA Run Selector	Jennifer E Phillips-Cremins	May 22, 2017
GSE87548	Layer-specific ATAC-seq of the neurons of adult mouse visual cortex defined by Cre-driver lines	Other	Mus musculus	20	BED BROADPEAK NARROWPEAK TXT SRA Run Selector	Lucas T Gray	Jan 01, 2017