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9654 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					BIGBED
GSE33480	RNA-seq from ENCODE/Caltech	Expression profiling by high throughput sequencing	Homo sapiens	24	BAI BAM BIGBED BIGWIG GTF TXT SRA Run Selector	ENCODE DCC	Jul 12, 2012
GSE42075	RUNX1 is a key target gene in t(4;11) leukemias and contributes to gene activation by interacting with the AF4-MLL complex	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BIGBED BIGWIG SRA Run Selector	Erica Ballabio	Jan 31, 2013
GSE52146	High resolution ChIP sequencing reveals novel bindings targets and prognostic role for SOX11 in Mantle cell lymphoma (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BIGBED SRA Run Selector	Samir Parekh	Aug 07, 2014
GSE52149	High resolution ChIP sequencing reveals novel bindings targets and prognostic role for SOX11 in Mantle cell lymphoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	10	BIGBED	Samir Parekh	Aug 07, 2014
GSE59538	Self-enforcing Feedback Activation between BCL6 and Pre-B Cell Receptor Signaling Defines a Distinct Subtype of Acute Lymphoblastic Leukemia	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BIGBED BIGWIG SRA Run Selector	Huimin Geng	Feb 08, 2015
GSE59541	BCL6 represents a therapeutic target in E2A-PBX1 and MLL-rearranged acute lymphoblastic leukemia	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	BIGBED BIGWIG SRA Run Selector	Huimin Geng	Dec 31, 2019
GSE59826	Identification of genomic associations of transcription factors BCL11B, Ikaros, and Mi2beta in primary mouse thymocytes	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BIGBED BW SRA Run Selector	Walter K Vogel	Dec 31, 2021
GSE61475	Transcription factor binding dynamics during human ES cell differentiation	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	204	BIGBED BW TXT SRA Run Selector	Alexander Tsankov	Feb 19, 2015
GSE63057	7q11.23 dosage-dependent dysregulation in the human pluripotent state primes aberrant transcriptional programs in disease-relevant lineages (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	22	BIGBED BIGWIG SRA Run Selector	Giuseppe Testa	Dec 15, 2014
GSE63058	7q11.23 dosage-dependent dysregulation in the human pluripotent state primes aberrant transcriptional programs in disease-relevant lineages	Expression profiling by array Expression profiling by high throughput sequencing Genome variation profiling by SNP array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	139	BIGBED BIGWIG CEL CYCHP	Giuseppe Testa	Dec 15, 2014
GSE71473	Effect of DNMT3A R882H mutation or WT expression on global DNA methylation patterns of hematopoietic stem/progenitor cells with NRAS G12D co-transduction (eRRBS)	Methylation profiling by high throughput sequencing	Mus musculus	3	BIGBED SRA Run Selector	Rui Lu	Jun 23, 2016
GSE71475	Epigenetic perturbations by Arg882-mutated DNMT3A potentiate aberrant stem cell gene expression program and acute leukemia development	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	46	BEDGRAPH BIGBED CEL	Rui Lu	Jun 23, 2016
GSE73212	Promoter H3K4 methylation dynamically reinforces activation-induced pathways in human CD4 T cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	127	BIGBED BW GFF SRA Run Selector	Ryan Conrad Thompson	Jun 01, 2016
GSE78585	polyA mRNA RNA-seq from fibroblast of lung (ENCSR000COO)	Expression profiling by high throughput sequencing	Homo sapiens	2	BED BIGBED BIGWIG GTF TSV TXT	ENCODE DCC	Mar 18, 2016
GSE78586	polyA mRNA RNA-seq from mammary epithelial cell (ENCSR000COX)	Expression profiling by high throughput sequencing	Homo sapiens	1	BED BIGBED BIGWIG GTF TSV TXT	ENCODE DCC	Mar 18, 2016
GSE78587	polyA mRNA RNA-seq from skeletal muscle myoblast (ENCSR000COY)	Expression profiling by high throughput sequencing	Homo sapiens	2	BED BIGBED BIGWIG GTF TSV TXT	ENCODE DCC	Mar 18, 2016
GSE78588	polyA mRNA RNA-seq from endothelial cell of umbilical vein (ENCSR000COZ)	Expression profiling by high throughput sequencing	Homo sapiens	2	BED BIGBED BIGWIG GTF TSV TXT	ENCODE DCC	Mar 18, 2016
GSE78589	polyA mRNA RNA-seq from endothelial cell of umbilical vein (ENCSR000CPA)	Expression profiling by high throughput sequencing	Homo sapiens	2	BED BIGBED BIGWIG GTF TSV TXT	ENCODE DCC	Mar 18, 2016
GSE78590	polyA mRNA RNA-seq from endothelial cell of umbilical vein (ENCSR000CPB)	Expression profiling by high throughput sequencing	Homo sapiens	2	BED BIGBED BIGWIG GTF TSV TXT	ENCODE DCC	Mar 18, 2016
GSE78591	polyA depleted RNA-seq from keratinocyte (ENCSR000CPI)	Expression profiling by high throughput sequencing	Homo sapiens	3	BED BIGBED BIGWIG GTF TSV TXT	ENCODE DCC	Mar 18, 2016