GEO Browser - GEO

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120 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Escherichia coli		TXT		Prior to Apr 01, 2015
GSE62898	Control of the E. coli SOS regulon expression by intracellular dNTP pool changes	Expression profiling by array	Escherichia coli Escherichia coli CFT073 Escherichia coli O157:H7 str. EDL933 Escherichia coli O157:H7 str. Sakai Escherichia coli str. K-12 substr. MG1655	5	TXT	Iwona Fijalkowska	Mar 31, 2015
GSE66995	Expression profiling of E. coli expressing the heterologous sigma70 factor (rpoD) of Lactobacillus plantarum	Expression profiling by array	Escherichia coli Escherichia coli CFT073 Escherichia coli O157:H7 str. EDL933 Escherichia coli O157:H7 str. Sakai Escherichia coli str. K-12 substr. MG1655	12	TXT	Stefan Marcus Gaida	Mar 18, 2015
GSE60107	Next generation sequencing analysis reveals that the ribonucleases RNase II, RNase R and PNPase affect bacterial motility and biofilm formation in E. coli	Expression profiling by high throughput sequencing	Escherichia coli	4	TXT SRA Run Selector	Cecilia M. Arraiano	Mar 17, 2015
GSE58623	BolA is a transcriptional switch that turns off motility and turns on biofilm development (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	2	TXT SRA Run Selector	Cecilia M. Arraiano	Feb 19, 2015
GSE55719	Transcriptome reorganization of gene-rewired Escherichia coli cells in response to histidine depletion	Expression profiling by genome tiling array	Escherichia coli	90	CEL TXT	Bei-Wen Ying	Jan 12, 2015
GSE62094	Lysine acetylation effect in gene expression in Escherichia coli	Expression profiling by array	Escherichia coli Escherichia coli K-12	18	CEL TXT	Sara Castaño Cerezo	Oct 07, 2014
GSE51170	Identification of building principles of methylation states at CG rich regions by high-throughput editing of a mammalian genome	Methylation profiling by high throughput sequencing	Escherichia coli Mus musculus synthetic construct	19	TXT SRA Run Selector	Dirk Schuebeler	Sep 30, 2014
GSE59408	Prediction of antibiotic resistance by large-scale phenotypic and genotypic data	Expression profiling by array	Escherichia coli	42	TXT	Chikara Furusawa	Sep 17, 2014
GSE23578	Cyanide response in Escherichia coli	Expression profiling by array	Escherichia coli	8	TXT	Daniel R Hyduke	Jul 31, 2014
GSE58176	Transcriptional profiling of E. coli cultures exposed to tellurite 0.5 µg/ml	Expression profiling by array	Escherichia coli Escherichia coli K-12	2	GPR TXT	David Enrique Loyola	Jul 30, 2014
GSE44211	Gene expression in Escherichia coli treated with human PGRP, gentamicin, and CCCP	Expression profiling by array	Escherichia coli	12	CEL TXT	Roman Dziarski	Jul 25, 2014
GSE55879	Dynamic transcriptome structure of E. coli K-12 MG1655 across growth	Expression profiling by array	Escherichia coli Escherichia coli str. K-12 substr. MG1655	8	TXT	Aaron Brooks	Jul 22, 2014
GSE59050	Phenotypic Convergence in Bacterial Adaptive Evolution to Ethanol Stress	Expression profiling by genome tiling array	Escherichia coli	31	CEL TXT	Takaaki Horinouchi	Jul 21, 2014
GSE57245	Identification of Gram-positive bacteria using BC-GP assay	Other	Bacillus licheniformis Corynebacterium afermentans Corynebacterium striatum Enterococcus faecalis Enterococcus faecium Enterococcus gallinarum Escherichia coli Klebsiella pneumoniae Leuconostoc lactis Listeria Listeria monocytogenes Micrococcus Micrococcus luteus Staphylococcus Staphylococcus aureus Staphylococcus capitis Staphylococcus caprae Staphylococcus epidermidis Staphylococcus haemolyticus Staphylococcus hominis Staphylococcus lugdunensis Staphylococcus saprophyticus Staphylococcus simulans Streptococcus Streptococcus agalactiae Streptococcus anginosus Streptococcus anginosus group Streptococcus australis Streptococcus constellatus Streptococcus dysgalactiae Streptococcus gallolyticus Streptococcus gordonii Streptococcus mitis Streptococcus parasanguinis Streptococcus pneumoniae Streptococcus pyogenes Streptococcus salivarius Streptococcus thermophilus	104	TXT	Seon Young Kim	May 30, 2014
GSE46113	Transcriptional profile of pulsed AsxR in Escherichia coli O157:H7 str. TUV93-0	Expression profiling by array	Escherichia coli Escherichia coli O157:H7	1	GPR TXT	Jai Justin Tree	May 22, 2014
GSE46120	Small RNAs and RNA chaperone Hfq in enterohemorrhagic E. coli	Expression profiling by array Expression profiling by high throughput sequencing	Escherichia coli Escherichia coli O157:H7 Escherichia coli O157:H7 str. Sakai Escherichia coli str. K-12 substr. MG1655	12	GPR GTF TXT	Jai Justin Tree	May 22, 2014
GSE16335	Escherichia coli K-12: luxS mutant LW12 vs. wild type W3110 under H2O2 stress	Expression profiling by array	Escherichia coli	4	TXT	Hua Ling	May 08, 2014
GSE56720	Nascent elongating transcript sequencing (NET-seq) for Escherichia coli and Bacillus subtilis reveals a consensus pause sequence enriched at translation start sites.	Expression profiling by high throughput sequencing Other	Bacillus subtilis Escherichia coli	8	TXT WIG SRA Run Selector	Matthew H Larson	May 05, 2014
GSE57084	Expression analysis of an enrofloxacin and a tetracline resistant Escherichia coli strain	Expression profiling by array	Escherichia coli Escherichia coli str. K-12 substr. MG1655	24	FTR TXT	Nadine Händel	Apr 26, 2014
GSE54199	Transcriptome and marker frequency analysis of E. coli (control vs. Trimethoprim) and S. pneumoniae (control vs. HPUra/Kanamycin)	Genome variation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Escherichia coli Streptococcus pneumoniae	18	TXT SRA Run Selector	Jelle Slager	Apr 10, 2014