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40709 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing
GSE140049	Non-canonical base modifications of bacterial origin in a eukaryotic genome [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Adineta vaga	8	BED SRA Run Selector	Irina Arkhipova	Jan 07, 2022
GSE140052	Non-canonical base modifications of bacterial origin in a eukaryotic genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Adineta vaga	17	BED BW	Irina Arkhipova	Jan 07, 2022
GSE205799	Ethylene-induced flowering in Aechmea fasciata	Genome binding/occupancy profiling by high throughput sequencing	Aechmea fasciata	6	BEDGRAPH	Jiabin Wang	Jun 10, 2022
GSE162150	Updated and validated global cis-regulatory element map which includes the M/m sex-determining region of Aedes aegypti	Genome binding/occupancy profiling by high throughput sequencing	Aedes aegypti	3	NARROWPEAK SRA Run Selector	Ronald J Nowling	Nov 26, 2020
GSE210270	Transcriptional readthrough as a conserved mechanism for piRNA cluster expression in mosquitoes	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Aedes aegypti	38	BED BROADPEAK NARROWPEAK	Jieqiong Qu	Feb 05, 2023
GSE277129	Identifying the target genes of the arginine transcription factor ArgR	Genome binding/occupancy profiling by high throughput sequencing	Aeromonas veronii	2	XLS	Chaolun Liu	Sep 15, 2024
GSE182881	Conformation and dynamic interactions of the multipartite genome in Agrobacterium tumefaciens	Genome binding/occupancy profiling by high throughput sequencing Other	Agrobacterium tumefaciens	42	CSV TXT SRA Run Selector	Xindan Wang	Jan 30, 2022
GSE196319	Centromere interactions promote the maintenance of the multipartite genome in Agrobacterium tumefaciens	Genome binding/occupancy profiling by high throughput sequencing Other	Agrobacterium tumefaciens Bacillus subtilis PY79	29	CSV TXT ZIP	Xindan Wang	Apr 28, 2022
GSE217592	Chromatin states at homeoprotein loci distinguish axolotl limb segments prior to regeneration [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Ambystoma mexicanum	34	BW	Jingkui Wang	Apr 10, 2023
GSE217594	Chromatin states at homeoprotein loci distinguish axolotl limb segments prior to regeneration	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Ambystoma mexicanum	113	BW	Jingkui Wang	Apr 10, 2023
GSE232080	Adrenergic signaling stimulates body-wide stem cell activation for limb regeneration (ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Ambystoma mexicanum	6	NARROWPEAK	Jessica Whited	May 13, 2023
GSE276204	Adrenergic signaling stimulates body-wide stem cell activation for limb regeneration	Genome binding/occupancy profiling by high throughput sequencing	Ambystoma mexicanum	7	NARROWPEAK	Jessica Whited	Sep 04, 2024
GSE79645	Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity	Genome binding/occupancy profiling by high throughput sequencing	Amphimedon queenslandica	20	BED BW SRA Run Selector	Federico Gaiti	Mar 31, 2017
GSE111068	Early metazoan cell type diversity and the evolution of multicellular gene regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Amphimedon queenslandica Mnemiopsis leidyi Trichoplax adhaerens	10	BW TXT SRA Run Selector	Arnau Sebe-Pedros	Jul 05, 2018
GSE124016	Convergent evolution of a vertebrate-like methylome in a marine sponge	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Amphimedon queenslandica Mnemiopsis leidyi Nematostella vectensis Sycon ciliatum	36	CGMAP TXT SRA Run Selector	Alex de Mendoza	Aug 02, 2019
GSE51865	ChIP analysis unravels an exceptionally wide distribution of binding sites for the NtcA transcription factor in a heterocyst-forming cyanobacterium.	Genome binding/occupancy profiling by high throughput sequencing	Anabaena	2	BED TXT SRA Run Selector	Silvia Picossi	Jan 28, 2014
GSE64055	Identifying active cis-regulatory elements during the development of the limbs and external genitalia in the mouse and lizard.	Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Mus musculus	21	BED BW SRA Run Selector	Carlos Rafael Infante	Oct 01, 2015
GSE97367	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage (Gene expression profiling in several tetrapod species, bulk tissue RNA-seq)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Gallus gallus Homo sapiens Monodelphis domestica Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	197	BW TXT	Diego Cortez	Oct 27, 2017
GSE104457	PITX1 Promotes Chondrogenesis and Myogenesis in Mouse Hindlimbs Through Conserved Regulatory Targets [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis	3	BW SRA Run Selector	Jialiang Wang	Feb 14, 2018
GSE104460	PITX1 Promotes Chondrogenesis and Myogenesis in Mouse Hindlimbs Through Conserved Regulatory Targets	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Mus musculus	21	BW	Jialiang Wang	Feb 14, 2018