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Platform GPL10419 Query DataSets for GPL10419
Status Public on Jun 15, 2010
Title NimbleGen 25-mers oligo flax microarray
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Linum usitatissimum
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features. The .ndf and .ngd files are linked below as supplementary files.
native array description file: 090121_Lusi_BT_exp.ndf
native array description file: 090121_Lusi_BT_exp.ngd
 
Submission date May 17, 2010
Last update date Jun 15, 2010
Contact name Stephane Fenart
E-mail(s) stephane.fenart@univ-lille1.fr
Phone 0033320434028
Organization name University Lille 1
Department Biology
Lab UMR 1281
Street address Cité Scientifique
City Villeneuve d'Ascq
ZIP/Postal code 59665
Country France
 
Samples (62) GSM543866, GSM543867, GSM543868, GSM543869, GSM543870, GSM543871 
Series (2)
GSE21868 gene expression analysis in different tissues of Flax (Linum usitatissimum L.)
GSE29345 Transcriptomics and metabolomics profiling in Flax stem tissues containing contrasted secondary cell wall architectures.

Data table header descriptions
ID
Gene_ID gene description
SPOT_ID

Data table
ID Gene_ID SPOT_ID
GENOLIN_C1 lcl|genolin_c1 1018 nt highly similar to |EU117376|EU117376|Manihot esculenta cultivar TME3 chloroplast, complete genome. |Manihot esculenta (cassava) |circular|161453 lcl|genolin_c1 1018 nt highly similar to |EU117376|EU117376|Manihot esculenta cultivar TME3 chloroplast, complete genome. |Manihot esculenta (cassava) |circular|161453
GENOLIN_C10 lcl|genolin_c10 1858 nt highly similar to |Q9AT55|Q9AT55|RecName: Full=S-adenosylmethionine synthetase; EC=2.5.1.6; |Elaeagnus umbellata (Autumn olive) |AA|393 lcl|genolin_c10 1858 nt highly similar to |Q9AT55|Q9AT55|RecName: Full=S-adenosylmethionine synthetase; EC=2.5.1.6; |Elaeagnus umbellata (Autumn olive) |AA|393
GENOLIN_C100 lcl|genolin_c100 1394 nt highly similar to |P23322|P23322|RecName: Full=Oxygen-evolving enhancer protein 1, chloroplastic; Short=OEE1; AltName: Full=33 kDa subunit of oxygen evolving system of photosystem II; AltName: Full=OEC 33 kDa subunit; AltName: Ful lcl|genolin_c100 1394 nt highly similar to |P23322|P23322|RecName: Full=Oxygen-evolving enhancer protein 1, chloroplastic; Short=OEE1; AltName: Full=33 kDa subunit of oxygen evolving system of photosystem II; AltName: Full=OEC 33 kDa subunit; AltName: Ful
GENOLIN_C1000 lcl|genolin_c1000 1149 nt highly similar to |Q9LHP1|Q9LHP1|RecName: Full=60S ribosomal protein L7-4; |Arabidopsis thaliana (Mouse-ear cress) |AA|244 lcl|genolin_c1000 1149 nt highly similar to |Q9LHP1|Q9LHP1|RecName: Full=60S ribosomal protein L7-4; |Arabidopsis thaliana (Mouse-ear cress) |AA|244
GENOLIN_C10000 lcl|genolin_c10000 840 nt highly similar to |B5LNQ2|B5LNQ2|SubName: Full=Pathogenesis-induced protein; |Arachis hypogaea (Peanut) |AA|193 lcl|genolin_c10000 840 nt highly similar to |B5LNQ2|B5LNQ2|SubName: Full=Pathogenesis-induced protein; |Arachis hypogaea (Peanut) |AA|193
GENOLIN_C10001 lcl|genolin_c10001 861 nt similar to |Q9LVI4|Q9LVI4|RecName: Full=Protein TIFY 6B; AltName: Full=Jasmonate ZIM domain-containing protein 3; AltName: Full=Protein JASMONATE INSENSITIVE 3; |Arabidopsis thaliana (Mouse-ear cress) |AA|352 lcl|genolin_c10001 861 nt similar to |Q9LVI4|Q9LVI4|RecName: Full=Protein TIFY 6B; AltName: Full=Jasmonate ZIM domain-containing protein 3; AltName: Full=Protein JASMONATE INSENSITIVE 3; |Arabidopsis thaliana (Mouse-ear cress) |AA|352
GENOLIN_C10002 lcl|genolin_c10002 542 nt lcl|genolin_c10002 542 nt
GENOLIN_C10003 lcl|genolin_c10003 570 nt lcl|genolin_c10003 570 nt
GENOLIN_C10004 lcl|genolin_c10004 371 nt lcl|genolin_c10004 371 nt
GENOLIN_C10005 lcl|genolin_c10005 772 nt highly similar to |Q9FG73|Q9FG73|SubName: Full=Nucleolar protein-like; |Arabidopsis thaliana (Mouse-ear cress) |AA|682 lcl|genolin_c10005 772 nt highly similar to |Q9FG73|Q9FG73|SubName: Full=Nucleolar protein-like; |Arabidopsis thaliana (Mouse-ear cress) |AA|682
GENOLIN_C10007 lcl|genolin_c10007 1157 nt highly similar to |Q8LEA6|Q8LEA6|SubName: Full=Pantoate-beta-alanine ligase; |Arabidopsis thaliana (Mouse-ear cress) |AA|310 lcl|genolin_c10007 1157 nt highly similar to |Q8LEA6|Q8LEA6|SubName: Full=Pantoate-beta-alanine ligase; |Arabidopsis thaliana (Mouse-ear cress) |AA|310
GENOLIN_C10008 lcl|genolin_c10008 1469 nt highly similar to |Q6Z6G6|Q6Z6G6|SubName: Full=N-type ATP pyrophosphatase-like (Os02g0762300 protein); |Oryza sativa subsp japonica (Rice) |AA|363 lcl|genolin_c10008 1469 nt highly similar to |Q6Z6G6|Q6Z6G6|SubName: Full=N-type ATP pyrophosphatase-like (Os02g0762300 protein); |Oryza sativa subsp japonica (Rice) |AA|363
GENOLIN_C10009 lcl|genolin_c10009 1025 nt highly similar to |A1IW23|A1IW23|SubName: Full=MYB transcription factor; Flags: Fragment; |Phillyrea latifolia |AA|159 lcl|genolin_c10009 1025 nt highly similar to |A1IW23|A1IW23|SubName: Full=MYB transcription factor; Flags: Fragment; |Phillyrea latifolia |AA|159
GENOLIN_C1001 lcl|genolin_c1001 580 nt lcl|genolin_c1001 580 nt
GENOLIN_C10010 lcl|genolin_c10010 854 nt similar to |AM445372|AM445372|Vitis vinifera contig VV78X203055.8, whole genome shotgun sequence. |Vitis vinifera |linear|14910 lcl|genolin_c10010 854 nt similar to |AM445372|AM445372|Vitis vinifera contig VV78X203055.8, whole genome shotgun sequence. |Vitis vinifera |linear|14910
GENOLIN_C10011 lcl|genolin_c10011 530 nt similar to |X96598|X96598|A.thaliana mRNA for CaLB protein |Arabidopsis thaliana (thale cress) |linear|1836 lcl|genolin_c10011 530 nt similar to |X96598|X96598|A.thaliana mRNA for CaLB protein |Arabidopsis thaliana (thale cress) |linear|1836
GENOLIN_C10013 lcl|genolin_c10013 874 nt lcl|genolin_c10013 874 nt
GENOLIN_C10015 lcl|genolin_c10015 846 nt highly similar to |Q76KW1|Q76KW1|SubName: Full=Glutathione S-transferase; |Pisum sativum (Garden pea) |AA|234 lcl|genolin_c10015 846 nt highly similar to |Q76KW1|Q76KW1|SubName: Full=Glutathione S-transferase; |Pisum sativum (Garden pea) |AA|234
GENOLIN_C10016 lcl|genolin_c10016 403 nt lcl|genolin_c10016 403 nt
GENOLIN_C10017 lcl|genolin_c10017 404 nt lcl|genolin_c10017 404 nt

Total number of rows: 48021

Table truncated, full table size 8524 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL10419_090121_Lusi_BT_exp.ndf.gz 17.4 Mb (ftp)(http) NDF
GPL10419_090121_Lusi_BT_exp.ngd.gz 1.0 Mb (ftp)(http) NGD

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