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| Status |
Public on Oct 01, 2011 |
| Title |
Transcriptomics and metabolomics profiling in Flax stem tissues containing contrasted secondary cell wall architectures. |
| Organism |
Linum usitatissimum |
| Experiment type |
Expression profiling by array
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| Summary |
We used our previously described gene expression platform (Fenart et al., 2010) to assess gene expression along the stem of flax, both in inner and outer tissues.
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| Overall design |
32 chips study using total RNA from Internal and external part of Flax stem, sampled on whole stem or in different parts of the stem.
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| Contributor(s) |
Huis R, Fénart S |
| Citation(s) |
22331411 |
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| Submission date |
May 17, 2011 |
| Last update date |
May 02, 2012 |
| Contact name |
Stephane Fenart |
| E-mail(s) |
stephane.fenart@univ-lille1.fr
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| Phone |
0033320434028
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| Organization name |
University Lille 1
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| Department |
Biology
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| Lab |
UMR 1281
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| Street address |
Cité Scientifique
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| City |
Villeneuve d'Ascq |
| ZIP/Postal code |
59665 |
| Country |
France |
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| Platforms (1) |
| GPL10419 |
NimbleGen 25-mers oligo flax microarray |
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| Samples (32)
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| GSM725396 |
External part of whole stem, rep bio 1, rep tech 1 |
| GSM725397 |
External part of whole stem, rep bio 1, rep tech 2 |
| GSM725398 |
External part of whole stem, rep bio 2, rep tech 1 |
| GSM725399 |
External part of whole stem, rep bio 2, rep tech 2 |
| GSM725400 |
Internal part of whole stem, rep bio 1, rep tech 1 |
| GSM725401 |
Internal part of whole stem, rep bio 1, rep tech 2 |
| GSM725402 |
Internal part of whole stem, rep bio 2, rep tech 1 |
| GSM725403 |
Internal part of whole stem, rep bio 2, rep tech 2 |
| GSM725404 |
Upper External part of stem, rep bio 1, rep tech 1 |
| GSM725405 |
Upper External part of stem, rep bio 1, rep tech 2 |
| GSM725406 |
Upper External part of stem, rep bio 2, rep tech 1 |
| GSM725407 |
Upper External part of stem, rep bio 2, rep tech 2 |
| GSM725408 |
Upper Internal part of stem, rep bio 1, rep tech 1 |
| GSM725409 |
Upper Internal part of stem, rep bio 1, rep tech 2 |
| GSM725410 |
Upper Internal part of stem, rep bio 2, rep tech 1 |
| GSM725411 |
Upper Internal part of stem, rep bio 2, rep tech 2 |
| GSM725412 |
Middle External part of stem, rep bio 1, rep tech 1 |
| GSM725413 |
Middle External part of stem, rep bio 1, rep tech 2 |
| GSM725414 |
Middle External part of stem, rep bio 2, rep tech 1 |
| GSM725415 |
Middle External part of stem, rep bio 2, rep tech 2 |
| GSM725416 |
Middle Internal part of stem, rep bio 1, rep tech 1 |
| GSM725417 |
Middle Internal part of stem, rep bio 1, rep tech 2 |
| GSM725418 |
Middle Internal part of stem, rep bio 2, rep tech 1 |
| GSM725419 |
Middle Internal part of stem, rep bio 2, rep tech 2 |
| GSM725420 |
Lower External part of stem, rep bio 1, rep tech 1 |
| GSM725421 |
Lower External part of stem, rep bio 1, rep tech 2 |
| GSM725422 |
Lower External part of stem, rep bio 2, rep tech 1 |
| GSM725423 |
Lower External part of stem, rep bio 2, rep tech 2 |
| GSM725424 |
Lower Internal part of stem, rep bio 1, rep tech 1 |
| GSM725425 |
Lower Internal part of stem, rep bio 1, rep tech 2 |
| GSM725426 |
Lower Internal part of stem, rep bio 2, rep tech 1 |
| GSM725427 |
Lower Internal part of stem, rep bio 2, rep tech 2 |
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| Relations |
| BioProject |
PRJNA140157 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE29345_RAW.tar |
260.5 Mb |
(http)(custom) |
TAR (of CALLS, PAIR) |
| Processed data included within Sample table |
| Processed data provided as supplementary file |
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