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Status
Public on Jul 28, 2010
Title
[RaGene-1_0-st] Affymetrix Rat Gene 1.0 ST Array [probe set (exon) version]
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Rattus norvegicus Manufacturer
Affymetrix
Manufacture protocol
See manufacturer's web site
Description
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
Submission date
Jul 28, 2010
Last update date
Jul 29, 2010
Organization
Affymetrix, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov, support@affymetrix.com Phone
888-362-2447
URL
http://www.affymetrix.com/index.affx Street address
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Samples (76)
GSM642729 , GSM642730 , GSM642801 , GSM642802 , GSM642803 , GSM642804
GSM642805 ,
GSM642806 ,
GSM945778 ,
GSM945779 ,
GSM945780 ,
GSM945781 ,
GSM945782 ,
GSM945783 ,
GSM945784 ,
GSM945785 ,
GSM945786 ,
GSM945787 ,
GSM945788 ,
GSM945789 ,
GSM945790 ,
GSM945791 ,
GSM945792 ,
GSM945793 ,
GSM945794 ,
GSM945795 ,
GSM1040119 ,
GSM1040120 ,
GSM1040121 ,
GSM1040122 ,
GSM1040123 ,
GSM1040124 ,
GSM1040125 ,
GSM1040126 ,
GSM1040127 ,
GSM1040128 ,
GSM1040129 ,
GSM1040130 ,
GSM1614007 ,
GSM1614008 ,
GSM1614009 ,
GSM1614010 ,
GSM1614011 ,
GSM1614012 ,
GSM1614013 ,
GSM1614014 ,
GSM1868604 ,
GSM1868605 ,
GSM1868606 ,
GSM1868607 ,
GSM1868608 ,
GSM1868609 ,
GSM2344813 ,
GSM2344814 ,
GSM2344815 ,
GSM2344816 ,
GSM2344817 ,
GSM2344818 ,
GSM2344819 ,
GSM2344820 ,
GSM2344821 ,
GSM2344822 ,
GSM2344823 ,
GSM2344824 ,
GSM2344825 ,
GSM2344826 ,
GSM2344827 ,
GSM2344828 ,
GSM2344829 ,
GSM2344830 ,
GSM2344831 ,
GSM2344832 ,
GSM2344833 ,
GSM2344834 ,
GSM2344835 ,
GSM2344836 Series (8)
GSE26174 Gene Expression Profiling of the Retina after Transcorneal Electrical Stimulation in Wildtype Brown Norway Rats
GSE38584 Hierarchical regulation in a KRAS pathway-dependent transcriptional network revealed by a reverse-engineering approach (7TF and control)
GSE38585 Hierarchical regulation in a KRAS pathway-dependent transcriptional network revealed by a reverse-engineering approach (RAS-ROSE and ROSE with siRNA)
GSE38614 Hierarchical regulation in a KRAS pathway-dependent transcriptional network revealed by a reverse-engineering approach
GSE42438 PTHRP/Adenylate cyclase promotes parietal whereas Wnt/β-catenin signaling promotes visceral endoderm differentiation of rat XEN cells.
GSE66079 Expression data of embryonic kidney from MWF E15.5 and SHR 16.0 rats
GSE72701 Gene expression profiling in a rat model of monocrotaline-induced heart failure
GSE88726 Aberrant striatal but not nigral gene expression profiles are specifically associated with dyskinesia behavior following levodopa treatment in the 6-hydroxydopamine lesioned rat
Data table header descriptions ID probe set ID
GB_LIST GenBank and RefSeq Accessions from mrna_assignment column
SPOT_ID genomic location of the corresponding transcript cluster in the version of the genome assembly used at annotation time. Coordinates are standard 1-based (length=stop-start+1).
seqname chromosome number
RANGE_GB NCBI RefSeq for chromosome of current build
RANGE_STRAND strand (+|-)
RANGE_START start (integer). Coordinates are standard 1-based (length=stop-start+1).
RANGE_STOP stop (integer). Coordinates are standard 1-based (length=stop-start+1).
probe_count Total number of probes in the probe set.
transcript_cluster_id Unique identifier for the transcript cluster containing the probe set.
exon_id Unique identifier for the exon cluster containing the probe set.
psr_id Unique identifier for the probe selection region containing the probe set.
gene_assignment Gene name(s) for each assigned mRNA for mRNAs that corresponds to known genes.
mrna_assignment Public mRNAs that should be detected by this probe set based on sequence alignment determined at the time of the current NetAffx annotation update.
probeset_type Array design category of the probe set.
Data table ID GB_LIST SPOT_ID seqname RANGE_GB RANGE_STRAND RANGE_START RANGE_STOP probe_count transcript_cluster_id exon_id psr_id gene_assignment mrna_assignment probeset_type 10700001 control
622
---
control->affx
10700002 control
454
---
control->bgp->antigenomic
10700003 control
723
---
control->affx
10700004 control
3310
---
control->affx
10700005 control
20
--- // AFFX-BioB-3_at, bac_spike // --- // --- // --- // ---
control->affx
10700006 control
477
---
control->bgp->antigenomic
10700007 control
468
---
control->bgp->antigenomic
10700008 control
11
---
control->bgp->antigenomic
10700009 control
132
---
control->bgp->antigenomic
10700010 control
489
---
control->bgp->antigenomic
10700011 control
474
---
control->bgp->antigenomic
10700012 control
479
---
control->bgp->antigenomic
10700013 control
20
--- // AFFX-BioDn-5_at, bac_spike // --- // --- // --- // ---
control->affx
10700014 control
20
--- // AFFX-BioC-5_at, bac_spike // --- // --- // --- // ---
control->affx
10700015 control
136
---
control->bgp->antigenomic
10700016 control
463
---
control->bgp->antigenomic
10700017 control
470
---
control->bgp->antigenomic
10700018 control
160
---
control->bgp->antigenomic
10700019 control
484
---
control->bgp->antigenomic
10700020 control
20
--- // AFFX-BioDn-3_at, bac_spike // --- // --- // --- // ---
control->affx
213067 60292 Kbytes .Supplementary data files not provided
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