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Platform GPL11081 Query DataSets for GPL11081
Status Public on Oct 20, 2011
Title Lodderomyces elongisporus 385K tiled array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Lodderomyces elongisporus NRRL YB-4239
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description NimbleGen design name: 091217_Lelo_KR_EXP; NimbleGen design ID: 26564. A tiled genome array from Lodderomyces elongisporus NRRL YB-4239 with 371,451 probes (average probe length 54.1 +/- 4.1 nt, median spacing distance 33 nt). The design includes random GC and other control probes.
 
Submission date Oct 21, 2010
Last update date Oct 20, 2011
Contact name Dana Jasmine Wohlbach
E-mail(s) wohlbacd@dickinson.edu
Organization name Dickinson College
Department Biology
Street address P.O. Box 1773
City Carlisle
State/province PA
ZIP/Postal code 17013
Country USA
 
Samples (6) GSM611305, GSM611306, GSM611307, GSM611308, GSM611309, GSM611310
Series (2)
GSE24855 Expression analysis of Lodderomyces elongisporus NRRL YB-4239 grown in glucose or xylose
GSE24858 Expression analysis of various fungi grown in glucose or xylose

Data table header descriptions
ID
Nprobes Number of probes on the array corresponding to that gene. All probes mapping to a gene are indicated in the included file LeloProbeMapping.txt
SPOT_ID Lodderomyces elongisporus NRRL YB-4239 protein ID number, as available on the genome portal (http://www.broadinstitute.org/annotation/genome/candida_group/MultiHome.html)

Data table
ID Nprobes SPOT_ID
LELT_00197 6 LELT_00197
LELT_00412 30 LELT_00412
LELT_01819 10 LELT_01819
LELT_03110 16 LELT_03110
LELT_00518 7 LELT_00518
LELT_03035 3 LELT_03035
LELT_02984 23 LELT_02984
LELT_00303 6 LELT_00303
LELT_01650 20 LELT_01650
LELT_01959 13 LELT_01959
LELT_04442 20 LELT_04442
LELT_03088 31 LELT_03088
LELT_02020 34 LELT_02020
LELT_02471 46 LELT_02471
LELT_05230 18 LELT_05230
LELT_04347 32 LELT_04347
LELT_03681 18 LELT_03681
LELT_02138 31 LELT_02138
LELT_02961 14 LELT_02961
LELT_04135 30 LELT_04135

Total number of rows: 5802

Table truncated, full table size 140 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL11081_091217_Lelo_KR_exp.ndf.gz 20.5 Mb (ftp)(http) NDF
GPL11081_LeloProbeMapping.txt.gz 245.6 Kb (ftp)(http) TXT

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