|
| Status |
Public on Oct 20, 2011 |
| Title |
Expression analysis of Lodderomyces elongisporus NRRL YB-4239 grown in glucose or xylose |
| Organism |
Lodderomyces elongisporus NRRL YB-4239 |
| Experiment type |
Expression profiling by genome tiling array
|
| Summary |
Investigation of whole genome gene expression level changes in Lodderomyces elongisporus NRRL YB-4239 grown aerobically in xylose, compared to the same strain grown aerobically in glucose.
|
| |
|
| Overall design |
A six array study using total RNA recovered from three separate cultures of Lodderomyces elongisporus NRRL YB-4239 grown in glucose and three separate cultures of Lodderomyces elongisporus NRRL YB-4239 grown in xylose. Each array measures the expression level of 371,451 probes (average probe length 54.1 +/- 4.1 nt) tiled across the Lodderomyces elongisporus NRRL YB-4239 genome with a median spacing distance of 33 nt. During data processing, probes are filtered to include only those probes corresponding to annotated protein-coding genes.
|
| |
|
| Contributor(s) |
Wohlbach DJ, Gasch AP |
| Citation(s) |
21788494 |
| |
| Submission date |
Oct 21, 2010 |
| Last update date |
Mar 22, 2012 |
| Contact name |
Dana Jasmine Wohlbach |
| E-mail(s) |
wohlbacd@dickinson.edu
|
| Organization name |
Dickinson College
|
| Department |
Biology
|
| Street address |
P.O. Box 1773
|
| City |
Carlisle |
| State/province |
PA |
| ZIP/Postal code |
17013 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL11081 |
Lodderomyces elongisporus 385K tiled array |
|
| Samples (6)
|
| GSM611305 |
Lodderomyces elongisporus Glucose Replicate 1 |
| GSM611306 |
Lodderomyces elongisporus Glucose Replicate 2 |
| GSM611307 |
Lodderomyces elongisporus Glucose Replicate 3 |
| GSM611308 |
Lodderomyces elongisporus Xylose Replicate 1 |
| GSM611309 |
Lodderomyces elongisporus Xylose Replicate 2 |
| GSM611310 |
Lodderomyces elongisporus Xylose Replicate 3 |
|
| This SubSeries is part of SuperSeries: |
| GSE24858 |
Expression analysis of various fungi grown in glucose or xylose |
|
| Relations |
| BioProject |
PRJNA133445 |
Less...
More...