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Platform GPL11242 Query DataSets for GPL11242
Status Public on Nov 24, 2010
Title E.coli_12k_Combimatrix
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Escherichia coli
Manufacturer CombiMatrix Corporation
Manufacture protocol Probes are directly synthesized on a 12k Combimatrix array by an in situ oligo synthesis system developed by Combimatrix Corporation (Mukilteo, USA) using the Combimatrix CustomArray synthesizer.
 
 
Submission date Nov 23, 2010
Last update date Nov 24, 2010
Contact name Spela Baebler
E-mail(s) spela.baebler@nib.si
Organization name National Institute of Biology
Department Department of Biotechnology and Systems Biology
Street address Vecna pot 111
City Ljubljana
ZIP/Postal code 1000
Country Slovenia
 
Samples (23) GSM628228, GSM628229, GSM628230, GSM628231, GSM628232, GSM628233 
Series (1)
GSE25561 Role of chaperones and a cytoplasmatic protease in recombinant protein production in E. coli at suboptimal growth temperature

Data table header descriptions
ID
Name feature name (Locus|Gene|Protein or control type)
ORF ORF Name
SEQUENCE oligonucleotide sequence
ecoCyc ecoCyc identifier of the target gene
SPOT_ID spot id

Data table
ID Name ORF SEQUENCE ecoCyc SPOT_ID
1 QC-3prime tgactgactggactgtgggtgtgcgatacgtgtcc NA
2 QC-5prime tgggtgtgcgatacgtgtccgactgactgactgac NA
3 Locus:b0029|Gene:ispH|Prot:NP_414570_81_115 b0029 catttacggcgcaccgatatatgtccgtcacgaag EG11081
4 Locus:b4267|Gene:idnD|Prot:NP_418688_253_287 b4267 gtagccattaatccgtctaaaccgtgcggtcactg G7893
5 Locus:b3649|Gene:rpoZ|Prot:NP_418106_31_65 b3649 gagaaaattggtaaccgttttgacctggtactggt EG10899
6 Locus:b0043|Gene:fixC|Prot:NP_414585_368_402 b0043 cgcagttaattaccgggatccgcgtcgataacctc EG11564
7 Locus:b0083|Gene:ftsL|Prot:NP_414625_21_56 b0083 agctctaagcaaagttaaaggatcgatgggaagcca EG11086
8 Locus:b2313|Gene:cvpA|Prot:NP_416816_129_163 b2313 ttactacacttacctgtcagtctggtttacgggct EG10169
9 Locus:b4167|Gene:yjeF|Prot:NP_418588_843_877 b4167 tgctggtttagtccgagtactgacccgcagtgaaa EG11758
10 Locus:b4099|Gene:phnI|Prot:NP_418523_762_796 b4099 aatggttaacggttttatcgacccgccgggtgagc EG10718
11 Locus:b1396|Gene:paaI|Prot:NP_415914_305_339 b1396 atcagggcaagcaaaccggtgtttacgacatcgaa G6717
12 Locus:b4381|Gene:deoC|Prot:NP_418798_69_103 b4381 cgacaccgacgagaaagtgatcgccctgtgtcatc EG10221
13 Locus:b4367|Gene:fhuF|Prot:NP_418787_513_547 b4367 actagaagcgaccggagagatcaacggcaaactta G7949
14 Locus:b0222|Gene:lpcA|Prot:NP_414757_225_259 b0222 gggctacccggcgattgctatttctgacgttagtc G6106
15 Locus:b3958|Gene:argC|Prot:NP_418393_38_72 b3958 ctggcgcagagctagtgacctatgtaaatcgccat EG10065
16 Locus:b1429|Gene:tehA|Prot:NP_415946_161_195 b1429 tattgactagcgcatttattgcccgactcatacgc EG11883
17 Locus:b2584|Gene:yfiQ|Prot:NP_417079_2574_2608 b2584 ccgcaagctcgggtttaacgttgatatccagctcg G7350
18 Locus:b0229|Gene:fhiA|Prot:NP_414764_1490_1524 b0229 gcgtgccggtcgatccgaatatgctcaaccagttc NA
19 Locus:b3347|Gene:fkpA|Prot:NP_417806_297_331 b3347 acagactctacaagcattcgaagctcgcgtgaagt G7716
20 Locus:b0508|Gene:hyi|Prot:NP_415041_241_275 b0508 gaagagtttcgggatggcgtagcagcagcgattcg G6277

Total number of rows: 12544

Table truncated, full table size 1204 Kbytes.




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