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Status
Public on Dec 02, 2010
Title
Agilent custom ME and HK design array [8mer]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
synthetic construct Manufacturer
Agilent Technologies
Manufacture protocol
This protein binding microarray (PBM) involved binding GST-tagged proteins to custom-designed, double-stranded 44K Agilent microarrays in order to determine their sequence preferences. The method is described in Berger et al., Nature Biotechnology 2006.
Description
8mer sequence depicted below is not the sequence represented on the array, but the targeted sequence. Please see the two array design files attached below for array probe sequences.
Submission date
Dec 01, 2010
Last update date
Jun 10, 2014
Contact name
Harm van Bakel
E-mail(s)
harm.vanbakel@mssm.edu Organization name
Mount Sinai School of Medicine
Department
Genetics and Genomic Sciences
Lab
Bakel Lab
Street address
One Gustave L. Levy Place, Box 1498
City
New York
State/province
New York
ZIP/Postal code
10029
Country
USA
Samples (4241)
GSM632125 , GSM632126 , GSM632127 , GSM632128 , GSM632129 , GSM632130
GSM632131 ,
GSM632132 ,
GSM632133 ,
GSM632134 ,
GSM632135 ,
GSM632136 ,
GSM632137 ,
GSM632138 ,
GSM632139 ,
GSM632140 ,
GSM632141 ,
GSM632142 ,
GSM632143 ,
GSM632144 ,
GSM632145 ,
GSM632146 ,
GSM632147 ,
GSM632148 ,
GSM632149 ,
GSM632150 ,
GSM632151 ,
GSM632152 ,
GSM632153 ,
GSM632154 ,
GSM632155 ,
GSM632156 ,
GSM632157 ,
GSM632158 ,
GSM632159 ,
GSM632160 ,
GSM632161 ,
GSM632162 ,
GSM632163 ,
GSM632164 ,
GSM768319 ,
GSM768320 ,
GSM768321 ,
GSM768322 ,
GSM768323 ,
GSM768324 ,
GSM1052241 ,
GSM1052242 ,
GSM1052243 ,
GSM1052244 ,
GSM1052245 ,
GSM1052246 ,
GSM1052247 ,
GSM1052248 ,
GSM1052249 ,
GSM1052250 ,
GSM1052251 ,
GSM1052252 ,
GSM1052253 ,
GSM1052254 ,
GSM1052255 ,
GSM1052256 ,
GSM1052257 ,
GSM1052258 ,
GSM1052259 ,
GSM1052260 ,
GSM1052261 ,
GSM1052262 ,
GSM1052263 ,
GSM1052264 ,
GSM1052265 ,
GSM1052266 ,
GSM1052267 ,
GSM1052268 ,
GSM1052269 ,
GSM1052270 ,
GSM1052271 ,
GSM1052272 ,
GSM1052273 ,
GSM1052274 ,
GSM1052275 ,
GSM1052276 ,
GSM1052277 ,
GSM1052278 ,
GSM1052279 ,
GSM1052280 ,
GSM1052281 ,
GSM1052282 ,
GSM1052283 ,
GSM1052284 ,
GSM1052285 ,
GSM1052286 ,
GSM1052287 ,
GSM1052288 ,
GSM1052289 ,
GSM1052290 ,
GSM1052291 ,
GSM1052292 ,
GSM1052293 ,
GSM1052294 ,
GSM1052295 ,
GSM1052296 ,
GSM1052297 ,
GSM1052298 ,
GSM1052299 ,
GSM1052300 ,
GSM1052301 ,
GSM1052302 ,
GSM1052303 ,
GSM1052304 ,
GSM1052305 ,
GSM1052306 ,
GSM1052307 ,
GSM1052308 ,
GSM1052309 ,
GSM1052310 ,
GSM1052311 ,
GSM1052312 ,
GSM1052313 ,
GSM1052314 ,
GSM1052315 ,
GSM1052316 ,
GSM1052317 ,
GSM1052318 ,
GSM1052319 ,
GSM1052320 ,
GSM1052321 ,
GSM1052322 ,
GSM1052323 ,
GSM1052324 ,
GSM1052325 ,
GSM1052326 ,
GSM1052327 ,
GSM1052328 ,
GSM1052329 ,
GSM1052330 ,
GSM1052331 ,
GSM1052332 ,
GSM1052333 ,
GSM1052334 ,
GSM1052335 ,
GSM1052336 ,
GSM1052337 ,
GSM1052338 ,
GSM1052339 ,
GSM1052340 ,
GSM1052341 ,
GSM1052342 ,
GSM1052343 ,
GSM1052344 ,
GSM1052345 ,
GSM1052346 ,
GSM1052347 ,
GSM1052348 ,
GSM1052349 ,
GSM1052350 ,
GSM1052351 ,
GSM1052352 ,
GSM1052353 ,
GSM1052354 ,
GSM1052355 ,
GSM1052356 ,
GSM1052357 ,
GSM1052358 ,
GSM1052359 ,
GSM1052360 ,
GSM1052361 ,
GSM1052362 ,
GSM1052363 ,
GSM1052364 ,
GSM1052365 ,
GSM1052366 ,
GSM1052367 ,
GSM1052368 ,
GSM1052369 ,
GSM1052370 ,
GSM1052371 ,
GSM1052372 ,
GSM1052373 ,
GSM1052374 ,
GSM1052375 ,
GSM1052376 ,
GSM1052377 ,
GSM1052378 ,
GSM1052379 ,
GSM1052380 ,
GSM1052381 ,
GSM1052382 ,
GSM1052383 ,
GSM1052384 ,
GSM1052385 ,
GSM1052386 ,
GSM1052387 ,
GSM1052388 ,
GSM1052389 ,
GSM1052390 ,
GSM1052391 ,
GSM1052392 ,
GSM1052393 ,
GSM1052394 ,
GSM1052395 ,
GSM1052396 ,
GSM1052397 ,
GSM1052398 ,
GSM1052399 ,
GSM1052400 ,
GSM1052401 ,
GSM1052402 ,
GSM1052403 ,
GSM1052404 ,
GSM1052405 ,
GSM1052406 ,
GSM1052407 ,
GSM1052408 ,
GSM1052409 ,
GSM1052410 ,
GSM1052411 ,
GSM1052412 ,
GSM1083484 ,
GSM1083485 ,
GSM1083486 ,
GSM1083487 ,
GSM1083488 ,
GSM1083489 ,
GSM1083490 ,
GSM1083491 ,
GSM1083492 ,
GSM1083493 ,
GSM1083494 ,
GSM1083495 ,
GSM1083496 ,
GSM1083497 ,
GSM1083498 ,
GSM1083499 ,
GSM1083500 ,
GSM1083501 ,
GSM1083502 ,
GSM1083503 ,
GSM1291226 ,
GSM1291227 ,
GSM1291228 ,
GSM1291229 ,
GSM1291230 ,
GSM1291231 ,
GSM1291232 ,
GSM1291233 ,
GSM1291234 ,
GSM1291235 ,
GSM1291236 ,
GSM1291237 ,
GSM1291238 ,
GSM1291239 ,
GSM1291240 ,
GSM1291241 ,
GSM1291242 ,
GSM1291243 ,
GSM1291244 ,
GSM1291245 ,
GSM1291246 ,
GSM1291247 ,
GSM1291248 ,
GSM1291249 ,
GSM1291250 ,
GSM1291251 ,
GSM1291252 ,
GSM1291253 ,
GSM1291254 ,
GSM1291255 ,
GSM1291256 ,
GSM1291257 ,
GSM1291258 ,
GSM1291259 ,
GSM1291260 ,
GSM1291261 ,
GSM1291262 ,
GSM1291263 ,
GSM1291264 ,
GSM1291265 ,
GSM1291266 ,
GSM1291267 ,
GSM1291268 ,
GSM1291269 ,
GSM1291270 ,
GSM1291271 ,
GSM1291272 ,
GSM1291273 ,
GSM1291274 ,
GSM1291275 ,
GSM1291276 ,
GSM1291277 ,
GSM1291278 ,
GSM1291279 ,
GSM1291280 ,
GSM1291281 ,
GSM1291282 ,
GSM1291283 ,
GSM1291284 ,
GSM1291285 ,
GSM1291286 ,
GSM1291287 ,
GSM1291288 ,
GSM1291289 ,
GSM1291290 ,
GSM1291291 ,
GSM1291292 ,
GSM1291293 ,
GSM1291294 ,
GSM1291295 ,
GSM1291296 ,
GSM1291297 ,
GSM1291298 ,
GSM1291299 ,
GSM1291300 ,
GSM1291301 ,
GSM1291302 ,
GSM1291303 ,
GSM1291304 ,
GSM1291305 ,
GSM1291306 ,
GSM1291307 ,
GSM1291308 ,
GSM1291309 ,
GSM1291310 ,
GSM1291311 ,
GSM1291312 ,
GSM1291313 ,
GSM1291314 ,
GSM1291315 ,
GSM1291316 ,
GSM1291317 ,
GSM1291318 ,
GSM1291319 ,
GSM1291320 ,
GSM1291321 ,
GSM1291322 ,
GSM1291323 ,
GSM1291324 ,
GSM1291325 ,
GSM1291326 ,
GSM1291327 ,
GSM1291328 ,
GSM1291329 ,
GSM1291330 ,
GSM1291331 ,
GSM1291332 ,
GSM1291333 ,
GSM1291334 ,
GSM1291335 ,
GSM1291336 ,
GSM1291337 ,
GSM1291338 ,
GSM1291339 ,
GSM1291340 ,
GSM1291341 ,
GSM1291342 ,
GSM1291343 ,
GSM1291344 ,
GSM1291345 ,
GSM1291346 ,
GSM1291347 ,
GSM1291348 ,
GSM1291349 ,
GSM1291350 ,
GSM1291351 ,
GSM1291352 ,
GSM1291353 ,
GSM1291354 ,
GSM1291355 ,
GSM1291356 ,
GSM1291357 ,
GSM1291358 ,
GSM1291359 ,
GSM1291360 ,
GSM1291361 ,
GSM1291362 ,
GSM1291363 ,
GSM1291364 ,
GSM1291365 ,
GSM1291366 ,
GSM1291367 ,
GSM1291368 ,
GSM1291369 ,
GSM1291370 ,
GSM1291371 ,
GSM1291372 ,
GSM1291373 ,
GSM1291374 ,
GSM1291375 ,
GSM1291376 ,
GSM1291377 ,
GSM1291378 ,
GSM1291379 ,
GSM1291380 ,
GSM1291381 ,
GSM1291382 ,
GSM1291383 ,
GSM1291384 ,
GSM1291385 ,
GSM1291386 ,
GSM1291387 ,
GSM1291388 ,
GSM1291389 ,
GSM1291390 ,
GSM1291391 ,
GSM1291392 ,
GSM1291393 ,
GSM1291394 ,
GSM1291395 ,
GSM1291396 ,
GSM1291397 ,
GSM1291398 ,
GSM1291399 ,
GSM1291400 ,
GSM1291401 ,
GSM1291402 ,
GSM1291403 ,
GSM1291404 ,
GSM1291405 ,
GSM1291406 ,
GSM1291407 ,
GSM1291408 ,
GSM1291409 ,
GSM1291410 ,
GSM1291411 ,
GSM1291412 ,
GSM1291413 ,
GSM1291414 ,
GSM1291415 ,
GSM1291416 ,
GSM1291417 ,
GSM1291418 ,
GSM1291419 ,
GSM1291420 ,
GSM1291421 ,
GSM1291422 ,
GSM1291423 ,
GSM1291424 ,
GSM1291425 ,
GSM1291426 ,
GSM1291427 ,
GSM1291428 ,
GSM1291429 ,
GSM1291430 ,
GSM1291431 ,
GSM1291432 ,
GSM1291433 ,
GSM1291434 ,
GSM1291435 ,
GSM1291436 ,
GSM1291437 ,
GSM1291438 ,
GSM1291439 ,
GSM1291440 ,
GSM1291441 ,
GSM1291442 ,
GSM1291443 ,
GSM1291444 ,
GSM1291445 ,
GSM1291446 ,
GSM1291447 ,
GSM1291448 ,
GSM1291449 ,
GSM1291450 ,
GSM1291451 ,
GSM1291452 ,
GSM1291453 ,
GSM1291454 ,
GSM1291455 ,
GSM1291456 ,
GSM1291457 ,
GSM1291458 ,
GSM1291459 ,
GSM1291460 ,
GSM1291461 ,
GSM1291462 ,
GSM1291463 ,
GSM1291464 ,
GSM1291465 ,
GSM1291466 ,
GSM1291467 ,
GSM1291468 ,
GSM1291469 ,
GSM1291470 ,
GSM1291471 ,
GSM1291472 ,
GSM1291473 ,
GSM1291474 ,
GSM1291475 ,
GSM1291476 ,
GSM1291477 ,
GSM1291478 ,
GSM1291479 ,
GSM1291480 ,
GSM1291481 ,
GSM1291482 ,
GSM1291483 ,
GSM1291484 ,
GSM1291485 ,
GSM1291486 ,
GSM1291487 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (28)
GSE25723 Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays
GSE30992 An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming
GSE31007 An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming [protein binding microarray]
GSE42864 Evaluation of methods for modeling transcription factor sequence specificity
GSE44338 CG methylated microarrays identify novel methylated sequence bound by the CEBPB|ATF4 heterodimer that are active in vivo
GSE52520 Evaluation of DNA-binding preferences of C2H2 zinc finger domains by PBM
GSE52523 Large-scale characterization of DNA binding landscape of eukaryotic C2H2 zinc fingers
GSE53348 Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
GSE65719 Mapping and Analysis of Caenorhabditis elegans Transcription Factor Binding Specificities
GSE73117 Evaluation of DNA-binding preferences of non-metazoan C2H2 zinc finger proteins by PBM
GSE88897 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) increase CREB1 binding to the C/EBP half-site GCAA
GSE94634 Impact of cytosine methylation on DNA binding specificities of human transcription factors.
GSE100869 The Epstein-Barr virus B-ZIP protein Zta recognizes specific DNA sequences containing 5-methylcytosine and 5-hydroxymethylcytosine [Zta_5mCG]
GSE100870 The Epstein-Barr virus B-ZIP protein Zta recognizes specific DNA sequences containing 5-methylcytosine and 5-hydroxymethylcytosine [Zta_5mC_5hmC]
GSE100871 The Epstein-Barr virus B-ZIP protein Zta recognizes specific DNA sequences containing 5-methylcytosine and 5-hydroxymethylcytosine
GSE108273 Replacing C189 in the bZIP domain of Zta to S, T, V, and A changes DNA binding specificity to four types of double-stranded DNA (mCG)
GSE112018 The bZIP mutant CEBPB(V285A) has DNA binding propensities similar to CREB1 [CEBPMut_5mC_5hmC]
GSE112019 The bZIP mutant CEBPB(V285A) has sequence specific DNA binding propensities similar to CREB1 [CEBPMut_5mCG]
GSE112020 The bZIP mutant CEBPB(V285A) has sequence specific DNA binding propensities similar to CREB1
GSE115352 Mutating Zta (182N) changes sequence specific DNA binding (5mCG)
GSE121420 Similarity Regression predicts evolution of transcription factor sequence specificity
GSE126588 Mutating Zta(N182) to S, Q, T, I, and V changes sequence specific DNA binding to four types of DNA (65k data set)
GSE126589 Mutating Zta(N182) to S, Q, T, I, and V changes sequence specific DNA binding to four types of DNA (32k data set)
GSE126590 Mutating Zta(N182) to S, Q, T, I, and V changes sequence specific DNA binding to four types of DNA
GSE157085 Diverse CGG binding proteins across eukaryotes produced by independent domestications of hAT transposons
GSE218851 Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation [PBM]
GSE218852 Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation
GSE270411 Binding specificities of transcription factors of the oomycete Phytophthorainfestans reflect conserved and divergent evolutionary patterns and function
Relations Alternative to
GPL11261
Data table header descriptions ID 8mer
SEQUENCE 8mer sequence
Data table ID SEQUENCE AAAAAAAA
AAAAAAAA
AAAAAAAC
AAAAAAAC
AAAAAAAG
AAAAAAAG
AAAAAAAT
AAAAAAAT
AAAAAACA
AAAAAACA
AAAAAACC
AAAAAACC
AAAAAACG
AAAAAACG
AAAAAACT
AAAAAACT
AAAAAAGA
AAAAAAGA
AAAAAAGC
AAAAAAGC
AAAAAAGG
AAAAAAGG
AAAAAAGT
AAAAAAGT
AAAAAATA
AAAAAATA
AAAAAATC
AAAAAATC
AAAAAATG
AAAAAATG
AAAAAATT
AAAAAATT
AAAAACAA
AAAAACAA
AAAAACAC
AAAAACAC
AAAAACAG
AAAAACAG
AAAAACAT
AAAAACAT
32896 578 Kbytes .Supplementary file Size Download File type/resource GPL11260_HK_design.txt.gz
878.3 Kb
(ftp) (http) TXT
GPL11260_ME_design.txt.gz
802.7 Kb
(ftp) (http) TXT
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