|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Dec 07, 2010 |
Title |
STv7bEws_MMCC |
Technology type |
spotted DNA/cDNA |
Distribution |
non-commercial |
Organism |
Salmonella enterica |
Manufacturer |
Sidney Kimmel Cancer Center |
Manufacture protocol |
custom made Salmonella PCR product array
|
Support |
glass |
Coating |
aminosilane |
|
|
Description |
whole slide version of STv7E
|
|
|
Contributor(s) |
Porwollik S, Cheng P, Xia X, McClelland M |
Submission date |
Dec 03, 2010 |
Last update date |
Dec 07, 2010 |
Contact name |
Michael McClelland |
E-mail(s) |
mcclelland.michael@gmail.com
|
Phone |
858-336-9554
|
Organization name |
University of California, Irvine
|
Department |
Microbiology & Molecular Genetics
|
Street address |
132 Med Surge I
|
City |
Irvine |
State/province |
CA |
ZIP/Postal code |
92697 |
Country |
USA |
|
|
Samples (60)
|
GSM634837, GSM634844, GSM634845, GSM634858, GSM634859, GSM634860
GSM654611, GSM654612, GSM654613, GSM654614, GSM654615, GSM654616, GSM654617, GSM654618, GSM654619, GSM654626, GSM654627, GSM654628, GSM654629, GSM654630, GSM654631, GSM654632, GSM654633, GSM654634, GSM654635, GSM654636, GSM654637, GSM737212, GSM737213, GSM737214, GSM737215, GSM737216, GSM737217, GSM737218, GSM737219, GSM737238, GSM737239, GSM737240, GSM737241, GSM737242, GSM737243, GSM942954, GSM942955, GSM942956, GSM942957, GSM1020017, GSM1020018, GSM1020019, GSM1020020, GSM2738555, GSM2738556, GSM2738557, GSM2738558, GSM2738559, GSM2738560, GSM2738561, GSM2738562, GSM2738563, GSM2738564, GSM2738565
|
Series (7)
|
GSE25849 |
Definition of Salmonella rpoN regulon |
GSE26597 |
Transcriptional profile of Salmonella enterica serovars Kentucky and Enteritidis in response to acidic conditions |
GSE29735 |
Similar effects of an NO challenge and an lpdA knockout on transcription of Salmonella enterica sv Typhimurium 14028 |
GSE29739 |
Transcriptional profiles of anaerobically grown Typhimurium 14028 with and without hydrogen in CRHyd |
GSE38475 |
Transcriptome of dehydrated vs hydrated Salmonella cells |
GSE41606 |
Transcriptome of DTAC-resistant Salmonella Enteritidis |
GSE102477 |
Gene expression response of Salmonella enterica serovar Enteritidis phage type 8 to subinhibitory concentrations of trans-cinnamaldehyde and eugenol |
|
Data table header descriptions |
ID |
|
ARRAY_ROW |
|
ARRAY_COLUMN |
|
ROW |
|
COLUMN |
|
NEW_CHIP_ID |
|
SEQUENCE |
|
ORF |
|
PRIMARY_LT2_GENE |
|
LT2_GENE_IN_>_1_SPOT |
|
SPOT_REPRESENTS_>_1_LT2_GENE |
|
STM Gene symbol |
|
PRIMARY_CT18_GENE |
|
CT18_GENE_IN_>_1_SPOT |
|
SPOT_REPRESENTS_>_1_CT18_GENE |
|
STY Gene |
|
PRIMARY_SARB42_GENE |
|
SARB42_GENE_IN_>_1_SPOT |
|
SPOT_REPRESENTS_>_1_SARB42_GENE |
|
SPA Gene |
|
PRIMARY_PT4_GENE |
|
PT4_GENE_IN_>_1_SPOT |
|
SPOT_REPRESENTS_>_1_PT4_GENE |
|
STM_HOMOLOGY_IN_GENOME |
|
STY_HOMOLOGY_IN_GENOME |
|
SPA_HOMOLOGY_IN_GENOME |
|
SPT_HOMOLOGY_IN_GENOME |
|
SPOT_ID |
|
Data table |
ID |
ARRAY_ROW |
ARRAY_COLUMN |
ROW |
COLUMN |
NEW_CHIP_ID |
SEQUENCE |
ORF |
PRIMARY_LT2_GENE |
LT2_GENE_IN_>_1_SPOT |
SPOT_REPRESENTS_>_1_LT2_GENE |
STM Gene symbol |
PRIMARY_CT18_GENE |
CT18_GENE_IN_>_1_SPOT |
SPOT_REPRESENTS_>_1_CT18_GENE |
STY Gene |
PRIMARY_SARB42_GENE |
SARB42_GENE_IN_>_1_SPOT |
SPOT_REPRESENTS_>_1_SARB42_GENE |
SPA Gene |
PRIMARY_PT4_GENE |
PT4_GENE_IN_>_1_SPOT |
SPOT_REPRESENTS_>_1_PT4_GENE |
STM_HOMOLOGY_IN_GENOME |
STY_HOMOLOGY_IN_GENOME |
SPA_HOMOLOGY_IN_GENOME |
SPT_HOMOLOGY_IN_GENOME |
SPOT_ID |
1 |
1 |
1 |
1 |
1 |
CTRL6_001 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
CTRL6_001 |
2 |
1 |
1 |
1 |
2 |
CHIP6_4403 |
AATACGGCAACCTGGAAATAATGGAAAAGACATATAACCCCCAAGATATCGAACAGCCGCTTTACGAGCACTGGGAAAAGCAGGGCTATTTCAAGCCTAACGGCGACGAAAGCAAAGAGTCCTTCTGCATCATGATCCCGCCGCCGAACGTCACCGGCAGTTTGCATATGGGACATGCTTTCCAGCAAACCATCATGGATACCATGATCCGTTACCAGCGTATGCAGGGTAAAAACACCCTGTGGCAGGTCGGCACCGACCACGCCGGGATCGCCACCCAGATGGTGGTTGAGCGCAAGATTGCCGCTGAAGAAGGTAAAACCCGTCACGACTACGGCCGCGATGCGTTTATCGACAAAATCTGGCAGTGGAAAGCGGAATCCGGCGGCACCATTACCCGCCAAATGCGCCGTCTCGGCAACTCCGTTGACTGGGAGCGCGAGCGCTTCACCATGGACGAAGGCCTTTCCAATGCCGTGAAAGAAGTCTTTGTTCGCCTGTACAAAGAAGACCTGATTTACCGTGGCAAACGCCTGGTGAACTGGGACCCGAAACTGCGCACCGCCATCTCTGACCTGGAAGTGGAAAACCGCGAGTCCAAAGGCTCGATGTGGCACATCCGCTATCCGCTGGCCGACGGCGCGAAAACCGCAGACGGTAAAGATTATCTGGTTGTCGCCACCACCCGCCCGGAAACTATTCTCGGCGATACCGGCGTGGCCGTGAACCCGGAAGATCCGCGCTACCAGAGTCTTATCGGTAAATTCGTTATTCTGCCGCTGGTTAACCGCCGCATTCCGATTGTTGGCGACGAACACGCCGATATGGAAAAAGGCACCGGCTGCGTGAAGATCACCCCGGCGCACGACTTTAACGACTATGAGGTCGGGAAACGTCATGCCCTGCCGATGATCAACATCCTGACCTTTGACGGCGACATCCGCGAAAGCGCGGAAGTGTTCGATACCAAAGGTGAAGAGTCTGACGTTTATTCCAGCGAGATTCCGGCTGAGTTCCAGAAGCTGGAACGCTTTGCTGCCCGTAAAGCAGTCGTTGCTGCCGTTGACGCGCTGGGCCTGCTGGAAGAAATTAAACCGCACGATCTGACTGTCCCTTACGGCGACCGTGGCGGCGTGGTTATCGAACCGATGCTGACCGACCAGTGGTACGTCCGTGCTGACGTGCTGGCGAAAC |
STM4475, STY4814, SEN4228 |
STM4475 |
|
|
valS |
STY4814 |
|
|
valS |
SPA4276 |
|
|
valS |
SEN4228 |
|
|
100 |
100 |
100 |
100 |
|
3 |
1 |
1 |
1 |
3 |
CHIP6_1618 |
GTAAATATATGCTTACCGAAAAATATGATTTTCGCATTACCGATCAGATGACTATCCCACTCAGACCTCATTGGATAGCCAATGATTCATACAGGGAAAAGTGTAAAATGCTTGTCCTCAACCGGAGTAAAGGGGAAATTCATAAGGTAGACTTTAGTAAATTAACAGATTATATCAAAGAAGGTGATGTAATCTGTTTTAACGACAGTACTATAATAAACCATATGTTTATCTGTAAAACAAGACAGAATAGGTTAATTAAAATTGTTTTAGAGGGATTTTTACCAAATAATAGAGTAATTATTTCCGGACTTTTAAAAGAAAGGCTTAACGCGAATGATGTTTTCTATTTGGTTGATAACCCTGAAATTTCCATTAAGATAGAGCAAAGGTTTAGCGAGGAGAGCCAGTACCGGGCCGTCGTGGAAAATCATGAGGCCTTAATTTGCTATTTAGCCAGTCATGGTGAGCGTCTTGATGAGTATGTGGACTCCAGCTTGTTTTATAAATATCCAGATGCTTACCGTTCCGTTTTTTCTAAAAAATATGGTTCTTTGGAAATACCTTCTGCCGGCATTCATTTTACCTGGGATCTTATCCAAAGAATCAAAGATAAAGGTGGGTTAATATCCTTCATCACTTTACATGTTGCATCAACAGAAATGTTGTCCAACAGAAAAATACAAACAAAATGTGTAGAGGAAGTGACTATCAACGAAGAATACTACGAGGTTCCACAAGCTACAGCGGATATCATTAATACTGCGAAGCAAAATGGCGGACGTATTTTTGCCGTAGGAACTACCGTTACACGATGTCTGGAATCTGCGTATTCGAGGGAACACAATTGCCTCAAAGCAAGTTCTGGCTGGACTGCGCTTTATATACATCCAGGCTATCAACTGAAAGTGGTTGACTGCCTGCTAACGAACTTACATCAGCCAAAAACGACGCATATGGTGTTAACTGGTCAGTTTGCTGGGGTTGATCTACTCATTAAGGCCTATACCTCAGAACATATCCAGTCATGTCAGTTCGATATGTTTGGTGATTGCATGTTAATCATACAAGATGAAGGGCAGGGATGA |
STM1548.s, STY1513, SEN1504 |
STM1548.s |
|
|
- |
STY1513 |
|
|
|
SPA1315 |
|
1 |
- |
SEN1504 |
|
|
100 |
100 |
100 |
100 |
|
4 |
1 |
1 |
1 |
4 |
CHIP6_1805 |
TTCTTTTAGGTGAGGTTACCGTGTCACTTTCTTTGTCGTCGGTTCGCCGTCGTCTTTATCATAATCTGTTCGATTTGACTACGCGCTCAGGTCGCCGTTTTGAAGGGTTATGCGCGCTGTTTGCGCTGCTTAGCGTACTGGTCATTTTTGTTGAATCAGGCGTAGGAACGGAATATCACCTGACATTTGATGAATGGCATATTTTTGTCTGGCTGGAGCTCTGCGTTACCCTGATATTTACCGGTGAATACTTGCTCAGACTGTTTAGCTGGCCCGAACCGGCAAAATACGTTTTTAGTTTCTGGGGATTTATTGATCTGGTGACGATTTTGCCGCTGTACGTCATGTGGCTGTGGCCGGAAATTAGCCTGAACTATATGTTTGCCTGGCGCGCTATGCGAGCGATTCGCGTGCTGCGTATTCTTAAACTGCTACGCTTTATGCCATCGCTGCGGGTATTCTGGAGCGCCATTATTAGCGCGCGTCATCAGCTTATTCTGTTCTATTCATTTATTGCGATCGTGATGATTATTTTCGGTGCCCTGATGTATCTTATTGAAGGACCGAAATATGGCTTCACGACGCTTAATGCCTCGGTGTATTGGGCGATAGTGACAGTCACAACCGTGGGGTACGGTGATATTACGCCGCATACGCCGCTGGGACGTATTGTCGCGTCGGTGCTTATTTTGATTGGCTATTCGGTGATTGCGATTCCTACAGGACTGATTACCACGCACATGAGCAGCGCGTTTCAAAAACGTCACTGGCAGCGAAAATGTCCGCAGTGCCAGCAAAGCCAGCATGAACATAGCGCGCAATATTGTAACCGATGCGGCAGTAAGCTACCGGATTAA |
STM1741, STY1310, SEN1294 |
STM1741 |
|
|
|
STY1310 |
|
|
|
SPA1136 |
|
|
- |
SEN1294 |
|
|
100 |
100 |
100 |
100 |
|
5 |
1 |
1 |
1 |
5 |
CHIP6_3964 |
TATTAACTTCAGTAATATCCACCTCTGTTTTTGCTGGCGCTTATGTAGAAAACCGTGAGGCCTATAACCTGGCGTCTGACCAAATGGAGTTTATGCTGCGCGTCGGCTATAACTCCGATATGGGGGCCGGAATTATGTTGACCAATACCTATACGCTACAGCGTGATGATGAATTAAAGCACGGTTATAATGAGATTGAGGGCTGGTATCCATTATTTAAACCTACAGATAAATTAACCATCCAGCCTGGGGGGTTAATAAACGACAAAAGCATTGGTTCCGGCGGCGCCGTCTATCTGGATGTTAACTATAAATTTACCCCGTGGTTTAATCTTACGGTACGTAACCGATATAATCACAATAATTATAGTTCAACCGATTTGAATGGCGAACTGGATAATAATGACAGCTATGAAATCGGTAACTATTGGAATTTTATCATTACCGATAAATTTTCTTATACCTTTGAACCACACTATTTTTATAACGTTAATGATTTTAATAGTAGTAATGGTACGAAGCATCATTGGGAAATCACTAATACCTTCCGTTATCGTATCAATGAACACTGGTTGCCCTACTTTGAATTACGCTGGTTAGATCGTAACGTGGGCCCCTACCATAGAGAGCAAAACCAGATTCGTATCGGGGCGAAGTATTTCTTCTGA |
STM4016, STY3862, SEN3803 |
STM4016 |
|
|
yshA |
STY3862 |
|
|
|
SPA3857 |
|
|
yshA |
SEN3803 |
|
|
100 |
100 |
100 |
100 |
|
6 |
1 |
1 |
1 |
6 |
CHIP6_2474 |
GGGTAAACGCCTGATTGAAGATGAAGAGTACTGAGTTTCATCCAGCCGATTATGATGTACACGGACGTTTACGCCTGCCGTTTCTGTTCTGGTGCGTACTGCTACTTCAGGCGCGCGCCTGGGTACTCTTTGTCATTGCCGGTTCATCCCGTGGACAGGGTAATACTTTGTTAAACTTTTTTTATCCCGACCATGACAATTTTTGGCTGGGGCTGTTGCCCGGCGTTCCGGCGGTAGTGGCATTTTTACTCAGCGGGCGGCGTGACGCGGTTCCTGGTGTGTGGCGCTGGCTGCGCGGACTCCTGATCCTTGCTCAACTGGTGTCGTTGTGCTGGCTGCCGGTGATGTGGCTGGGTGGCGACCCGGTCAACGGCGTCGGGCTGGCGCTGCTGCTGGCGGACATCGTCGCGCTGATCTGGCTGTTAACCAATCAACGTTTGCGTGCCTGTTTTTCCCTTGAGAAAGAAT |
STM2448, STY2685, SEN2429 |
STM2448 |
|
|
yfeZ |
STY2685 |
|
|
|
SPA0418 |
|
|
yfeZ |
SEN2429 |
|
|
100 |
100 |
100 |
100 |
|
7 |
1 |
1 |
1 |
7 |
CHIP6_3586 |
AAGAAGTGAGGAAATAACACATGACTAAAGCAGGCAAAATAACCGCCGCCATCACAGGGACTTTCTTGTTGTTGATCGCCATAGTGATTTTGTTGATCGCAACATTTGACTGGAACCGCCTCAAACCGACCATCAACCAGAAAGTCTCTACCGAATTGAACCGGCCTTTCGCTATTCGCGGCGATTTAGGCGTGGTGTGGGAACGCCAAAAACAGGAGACCGGCTGGCGAAGCTGGGTACCGTGGCCGCATGTTCACGCGGAAGACGTCATTCTCGGCAATCCGCCAGATATTCCGGAAGTCACGATGGTGCATCTGCCACGCGTTGAGGCGACGCTTGCCCCACTGGCGCTCCTGACCAAAACCGTCTGGCTGCCGTGGATCAAACTGGTGAAACCCGACGCGCGTCTTATTCGTCTGTCCGAGAAAACCAATAACTGGACCTTTAACCTCGCGCAAGACAAGAATACGGACCCCAATGCTAAACCTTCCGCCTGGTCCTTCCGGCTGGATAATATTCTCTTCGACCAGGGGCGAATCGCGATCGATGATAAGGTCAGCAAGGCGGATATCACTATTCTGATCGATCCGTTAGGCAAACCGTTGCCGTTCAGCGAAGTGACGGGAACGAAAGGCAAAGCAGACAAATCCACCGTGGGCGACTATGTCTTCGGCCTGAAGGCGCAGGGGCGTTATAACGGGGAACCGTTGACCGGTACGGGGAAAATAGGCGGTATGCTGGCGCTACGCAGCGAAAGTACGCCTTTTCCTGTGCAGGCCGATTTCCGCTCTGGTAATACGCGGGTGGCTTTTAGCGGCGTGGTGAACGAACCGATGAAAATGGGCGGCGTCGATCTGCGGCTTAAATTCTCTGGCGATTCACTGGGCGATTTATATGATTTAACCGGCGTGCTGCTGCCGGATACGCCGCCGTTTGAGACCGATGGGCGATTGGTGGCGAAAATTGACGCCGAAAAGTCATCAGTATTTGATTATCGCGGTTTTAACGGGCGCATTGGCGACAGTGATATCCACGGCTCCCTCACTTATACCACCGGTAAACCGCGCCCTAAACTGGAAGGCGATGTCGAATCGCGCCAGTTACGCCTGGCCGATCTTGGGCCGCTGATTGGCGTGGATTCCGGGAAAGACGCTGAGCAGTCGAAACGGTCTGAACAGCGCAAAGGCGAGAAGAATGTTC |
STM3610, STY4193, SEN3433 |
STM3610 |
|
|
yhjG |
STY4193 |
|
|
|
SPA3466 |
|
|
yhjG |
SEN3433 |
|
|
100 |
100 |
100 |
100 |
|
8 |
1 |
1 |
1 |
8 |
CHIP6_2212 |
AAGATAAAGAGAGACTCAACATGAAATGGTTATGTTCAGTAGGTGTTGCTGTGAGTCTGGCGATGCAGCCAGCATTGGCGGAAAACCTGTTTGGCAATCACCCGCTGACGCCCGAAGCGCGCGACGCGTTCGTCACGGATTTACTCAAGAAAATGACTGTTGATGAAAAAATTGGTCAGTTACGTCTGATTAGCGTCGGCCCTGATAACCCGAAAGAAGCGATTCGCGAGATGATCAAAGACGGGCAGGTAGGGGCGATTTTCAATACCGTCACCCGCCAGGATATCCGTCAAATGCAGGATCAGGTGATGGCGTTGAGCCGCCTGAAAATTCCTCTCTTTTTTGCCTATGACGTGGTACACGGCCAGCGAACCGTCTTCCCGATAAGCCTCGGTCTGGCTTCTTCTTTTAATCTGGATGCGGTAAGAACCGTAGGACGCGTATCGGCGTATGAAGCGGCGGACGACGGCCTGAATATGACCTGGGCGCCGATGGTGGATGTCTCCCGCGATCCGCGTTGGGGACGCGCCTCCGAAGGCTTTGGCGAAGATACATATTTAACCTCTATCATGGGCGAAACCATGGTGAAAGCGATGCAGGGCAAAAGCCCGGCGGACCGCTATTCGGTGATGACCAGCGTGAAACATTTTGCCGCCTATGGCGCCGTTGAAGGCGGTAAAGAATACAACACCGTGGATATGAGTTCCCAGCGTCTGTTTAATGACTACATGCCGCCGTACAAAGCGGGGCTGGATGCGGGGAGCGGCGCGGTGATGGTGGCGCTGAACTCGCTGAACGGCACGCCTGCGACGTCAGATTCCTGGCTATTGAAAGATGTCCTGCGCGATGAGTGGGGCTTTAAGGGAATTACCGTTTCCGACCACGGCGCTATTAAAGAACTGATTAAACACGGTACCGCGGCCGACCCGGAAGATGCGGTGCGCGTGGCGCTAAAGGCAGGGGTGGATATGAGCATGGCGGATGAGTATTACAGCAAATATCTGCCGGGTCTGATTAAGTCGGGCAAAGTGACGATGGCGGAACTGGACGACGCGACGCGCCATGTGCTCAACGTAAAATATGACATGGGATTGTTTAACGACCCCTATAGCCATCTGGGGCCGAAAGAGAGCGACCCGGTGGACACCAATGCCGAAAGCCGCCTGCATCGTAAAGAGGCACGGGAAGTGG |
STM2166, STY2396, SEN2160 |
STM2166 |
|
|
bglX |
STY2396 |
|
|
bglX |
SPA0685 |
|
|
bglX |
SEN2160 |
|
|
100 |
100 |
100 |
100 |
|
9 |
1 |
1 |
1 |
9 |
CHIP6_2351 |
GCTTTCATAATGAGGTTAGGATGGACAATTTTCAGAAAGATATTGATGACAGGGCCAATTTAACCCTGTCCAACCGTTTTGAACTGCTGTTATTCCGTCTTGGTACATCGCTGCATGAACAGAAGTCAGAGCTGTTCGGCATCAATGTATTTAAGCTGCGCGAAATCGTACCAATGCCCGCCTTTACGCGCCCGGCAGGCATGAAAGCGCCGCTATTGGGCATGGTCAATATTCGGGATCAGGTCATTCCGGTGATTGATTTGCCAGCGGTAGCGGGCTGCAAGCCGGAAACCGGGCTGAATATTTTGCTGATCACCGAATATGCGCGCAGCGTACAGGCATTTGCCGTCGAGTCGGTGGAAAATATTATGCGTCTTGACTGGCAACAGGTGCATACCGCCGAGAAAGCCGTCAACGGTCGCTACATCACCAGTATTGCCTGCCTGGATGACAACAAAGAAACCAACAACCTGGCGCTGGTGCTCGACGTTGAGCAGATCCTTTATGATATTGTCCCCTCCAGCCACGATCTGCGCGCCACCAATCTGAAGACCAATAAATTTTATATTACCCCAGGCGCGGTAGCCATTGTGGCGGAAGACTCCAAAGTCGCCCGCGCGATGCTGGAAAAAGGGCTGAACGCGATGGGAATTCCGCATCAGATGCATGTGACCGGCAAGGATGCCTGGGAGAGAATCCAGCAACTGGCGCAGGAAGCGGAGGCCGAAGGTAAGCCAATTAGCGAGAAAATCGCGCTGGTCCTGACAGATCTTGAGATGCCGGAGATGGATGGCTTTACGTTAACGCGTAAAATTAAAACCGATGAACGGCTGAAAAAGATCCCGGTCGTTATCCACTCCTCGCTTTCCGGCAGCGCCAATGAAGATCATATACGTAAGGTGAAGGCCGACGGCTACGTGGCTAAGTTTGAGATTAACGAACTCTCTTCGGTCATTCAGGAAGTGCTGGAGCGCGCAGCAACAAACAGCCAGGGACCACTGATCAGCCGC |
STM2314, STY2545, SEN2296 |
STM2314 |
|
|
|
STY2545 |
|
|
|
SPA0549 |
|
|
- |
SEN2296 |
|
|
100 |
100 |
100 |
100 |
|
10 |
1 |
1 |
1 |
10 |
CHIP6_0293 |
CGTTAAGGAGGTGATAAAAATTGAAAAAGCTGAAACTGCATGGCTTTAACAATCTGACGAAAAGCCTGAGTTTTTGTATTTACGATATCTGCTACGCCAAAACCGCAGAAGAGCGCGATGGCTATATCGCCTATATCGATGAACTCTATAACGCCAACCGACTGACCGAGATCCTGTCGGAGACCTGCTCCATTATCGGCGCAAACATCCTGAACATCGCCCGTCAGGATTATGAACCCCAGGGTGCCAGCGTCACGATTCTGGTGAGCGAAGAGCCGATCGACCCGAAACTTATCGATCAAACCGAACATCCCGGCCCGCTGCCGGAAACCGTGGTGGCGCACCTCGATAAGAGCCATATCTGCGTGCATACCTATCCGGAAAGCCATCCGGAAGGCGGGCTATGCACCTTTCGCGCCGACATCGAAGTGTCAACCTGCGGGGTGATTTCACCGCTAAAAGCGCTCAATTACCTGATCCACCAGCTAGAGTCCGATATCGTCACCATCGATTACCGCGTGCGCGGCTTTACACGCGACGTCAACGGTATGAAGCACTTTATCGATCATGAGATTAATTCTATTCAGAATTTTATGTCGGAAGATATGAAGTCGCTGTATGACATGGTGGATGTAAACGTGTATCAGGAAAATATTTTCCATACCAAGATGCTGCTTAAAGAGTTCGATCTTAAGCACTACATGTTTCACACCAAACCGGAAGATCTCACTGAAACCGAACGCCAGGAGATCACCGCCGCGCTGTGGAAAGAGATGCGCGAGATTTACTACGGCCGCAATATT |
STM0165, STY0187, SEN0170 |
STM0165 |
|
|
speD |
STY0187 |
|
|
speD |
SPA0168 |
|
|
speD |
SEN0170 |
|
|
100 |
100 |
100 |
100 |
|
11 |
1 |
1 |
1 |
11 |
CHIP6_2609 |
TAAAAGGGTCTCCTCTTGTTGTGATGAGATTCGTATATATTTATATCTTAGTGATTTATGGATCATACTTGTGGTTTTCCTTAGGAGGTAACATGTTTACAATTAATAGTACTAACAGGGTGGCGAGCACAATCGCTCCATATGCATGTGTAAGCGATGTTAATTTAGAGGACAAGGCTACATTTTTAGATGAACATACCTCAATACATGCGAATGATTCTTCTTTGCAATGCTTTGTCTTAAATGATCAGCATGTTCCGCAGAATACATTAGCTACAGATGTTGAAGGCTACAATAGAGGATTACAGGAACGTATAAGCCTCGAGTACCAGCCCCTGGAAAGCATTGTTTTTCTACTCGGCACCCCTGCAGTTTTAGAGACTAAAGAGTCTTTATCATTACCAGTTTCCCCGGATGCTTTAACCCAAAAACTATTAAGCATTAGTAGCAATGATGAATGTAAATTATCAGGTAGCACCAGTTGCACTACCCCAGCCAGTCATAACCCACCGTCCGGTTATATCGCTCAATACAGGCATTCTGCAGAGGTTTTCCCGGATGAATAA |
STM2585 |
STM2585 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
100 |
60 |
60 |
60 |
|
12 |
1 |
1 |
1 |
12 |
CHIP6_1442 |
GCATTACTGGAGATTATAGGTTGATCTGGAAACGTGAAGTGACCCTCGATGCGCTTAATGCGATGGGGGAAGGGAATATGGTTGGCCTGCTTGATATCCGCTTTGAGCGTATTGGGGACGATACGCTGGAAGCGACAATGCCCGTCGATCATCGCACCAAACAGCCGTTCGGCTTGCTGCATGGCGGAGCGTCTGTGGTGCTGGCGGAAAGTATCGGCTCGGTCGCAGGTTATCTGTGTACGCAGGGGGAGCAAAAGGTGGTGGGGCTGGAGGTGAATGCCAACCATGTACGGTCGGCGCGTCAGGGGCGCGTACGAGGCGTCTGTAAAGCGTTGCATACCGGGGCTCGCCATCAGGTCTGGCAGATAGAGATCTTTGATGAACAGGGACGTCTGTGCTGTTCTTCGCGTCTTACTACAGCGATTGTGTGA |
STM1366, STY1757, SEN1679 |
STM1366 |
|
|
|
STY1757 |
|
|
|
SPA1489 |
|
|
- |
SEN1679 |
|
|
100 |
100 |
100 |
100 |
|
13 |
1 |
1 |
1 |
13 |
CHIP6_1663 |
GAAGTCTAAGGGATAACAACGTGGCAAAATCTCTCTTGCGCAGCGGCAATCTGGATGATTATCAGGCCGTGGGCGGCGGCGGTCAGGCCGTATTTGAATCAGCATTGCAAATTCGCGAAACGCTTCGTCTGCGTAAACAGCAGGCGATGGTTGACTGTCTGGCGATTCCGCAACTTAACGATAATGGCGATCGGGTTGACTGGTATTCGCCGATTGAAGGTCAGGCGATAGCGTGGAAAGCGGCTGACGAAGAGACACGTTCTCGGGCTTTACGTTATTTAGCCAGCACTTTTGAAAGCGCGGCTGCACTCAGTCGCAAAAGTCTGCAATCCGGTAAAACAGCGCTCCAGCTATTTGGTTCGCTACTTGAGAAAGCGACGCAATTTCCCGGTGAAAATCATGTTTTCCTGGTTAACGGCAAACCGGTTATCACCTTCTGGGGATTCGTTAATCTCAACGAAAATACACGCGATGATGTGCTGGACTGCCTGCGGGTAACCGAGGCAATCCCCGACATCCCTCTGGTCGAGCCGGAGCCCGAAGAAAAGCCGCTGGTAGAGGCGGCATTTAGTCAGGCGGATGAACCTTTGTTAACGTCTGTCATTGAGCCGCCGAAAATGCCGGAGGAACCTGCTGCGCCGCCCGTTATCGTTAGCGAGCCGAAGCCTGCCGCACCTATCCCGGTTGCTGAGGCGAAAAGAGCTCGTCGTCTACCGCTGTGGAGCTTACCTGTCGCTGCCGTGGTTATCGCCGCCGTCGCCACGCCTTTTTTCTGGCCATCTTCATCCGTTGACGGGGCCTCTCCTGTTCGCGCCGCGCCTGTCGCTACCGCGAAAACTGACGTTACCCCCTTGCCTGAACTCACCGCGCATTTGCCGCTGCATCGCGCTGAGGTGACGCCCGCCCCCAAAGCGGCGCCGTTGCCGGAAGCGCCTGTTATCATTGCCGCTATCCCCAAAGACGCGCTGGTGATGGACAATACGCAGATGAAGCTTGGAACCACGCGCTTTTTAAACGGTAGCTGGCGCATCAGTGTGGATGTCAAAGATCCGATTACCGGCAAGCCGCCCTCTCTGCGTTATCAGATCCAAAATAACAAAGGCATCGCGCGCGTAGTACATGGCGATAACGTGGTTTGTCGGGCGGAAATTTTCTCTGGTCTGCATCAAACGGGCGAGCTGATGATTAAAAGTCGCGGCA |
STM1593, STY1472, SEN1462 |
STM1593 |
|
|
srfA |
STY1472 |
|
|
srfA |
SPA1275 |
|
|
srfA |
SEN1462 |
|
|
100 |
100 |
100 |
100 |
|
14 |
1 |
1 |
1 |
14 |
CHIP6_3663 |
TTAATGAAGGTTAATACTATGAAAGCATTACATTTTGGCGCAGGTAATATCGGTCGTGGCTTTATCGGCAAATTGCTGGCTGACGCGGGGATACAACTGACGTTTGCGGATGTAAACCAGGTCGTACTCGATGCCCTGAATGCCCGTCATAGCTATCAGGTTCATGTTGTGGGTGAAAATGAGCAGGTGGATACCGTTTCCGGCGTCAACGCTGTCAGCAGCATCGGCGATGATGTTGTCGACCTGATTGCCCACGTTGATTTAATCACCACTGCCGTGGGCCCGGTGGTGCTTGAGCGTATCGCTCCGGCTATCGCTAAAGGGCTGGTAAAACGTAAGGCGCAGGGCGTGGATGCCCCGCTGAATATCATCGCCTGTGAAAATATGGTGCGCGGCACCACGCAGCTGAAAGGCCACGTAATGAACGCGCTGGCGGATGGCGATAAAGCCTGGGTTGAACAGCACGTCGGTTTTGTCGATTCCGCCGTTGACCGTATTGTGCCGCCATCTGCTTCTGCGACCAACGATCCGCTGGAAGTGACGGTAGAAACGTTCAGCGAGTGGATTGTCGATAAAACCCAGTTTAAAGGCGCGTTGCCAAACATTCCGGGGATGGAGTTAACGGATAACCTGATGGCATTTGTCGAACGTAAACTCTTCACGCTGAACACAGGTCATGCTATAACCGCGTACCTCGGCAAATTAGCCGGTCATCAAACCATTCGCGACGCTATTCTCGATGAGAGTATTCGCGCGGTGGTGAAAGGCGCGATGGAAGAAAGCGGCGCGGTGCTGATCAAACGCTACGGTTTTGATGCCGACAAACATGCGGCATACATTCAGAAAATCCTCGGTCGTTTTGAAAACCCGTATCTGAAAGATGACGTCGAACGCGTAGGTCGTCAGCCGCTACGCAAACTCAGCGCGGGCGACCGTCTGATCAAACCGCTGCTTGGCACCCTGGAATATGGTCTGCCGCATGTAAATCTGGTCAAAGGGATCGCGGCGGCGATGCATTTCCGTAGTGATGAAGATCCGCAGGCGCAGGAGTTGGCGGCTCTGATTACCGAAAAAGGCCCGCAGGCCGCGCTGGCGCAAATTTCCGGGCTGGATGCCAATAGCGATGTGGTGGCGGAGGCGGTTAACGCATATAACGCGACCAAATGA |
STM3686, STY4110, SEN3508 |
STM3686 |
|
|
mtlD |
STY4110 |
|
|
mtlD |
SPA3538 |
|
|
mtlD |
SEN3508 |
|
|
100 |
100 |
100 |
100 |
|
15 |
1 |
1 |
1 |
15 |
CHIP6_2366 |
CCGCCAGTAAGTGAAAAATTATGATAAATGCAAATCGTCCGATAATTAACCTCGATCTCGATCTGCTGAGAACGTTCGTGGCCGTTGCCGATCTGAACACCTTCGCCGCGGCGGCGGCGGCGGTATGTCGTACTCAGTCTGCGGTCAGTCAGCAAATGCAGCGTCTTGAGCAACTCGTGGGAAAGGAATTGTTCGCCCGCCATGGCCGTAACAAACTTTTGACCGAACACGGTATCCAGCTTCTGGGGTACGCCAGAAAAATCCTGCGTTTTAATGATGAGGCGTGTTCATCATTAATGTTCAGTAATCTTCAGGGAGTGTTAACAATCGGCGCTTCTGATGAATCAGCTGATACTATCCTGCCTTTTTTGCTTAGCCGAATCAGCTCGGTTTATCCGAAACTCGCGCTTGATGTACGGGTAAAACGCAACGCCTATATGGTGGACATGGTTAAATCGCAGGAAGTAGATTTGGTGGTGACGACTAACCAACCTCATTCGCTGGACTGTCTGAATTTGCGGACCTCGCCCACCCATTGGTATTGTGCGGCTGAGTATGTTTTGCAAAGGGGAGAGCCCGTACCACTAGTCCTGCTGGACGATCCCAGCCCATTCCGCGATATGGTGCTGGAGACGCTAAATGCAGCGGGTATTCCCTGGCGGCTGGCCTATGTGGCGTCTACATTACCGGCGGTACGCGCGGCCGTTAAAGCCGGTCTTGGCGTAACGGCTCGACCTGTCGAAATGATGAGTCCCGACCTTCGCGTGCTGGGCGCCGCAGACGGATTACCGCCTTTGCCGGATACGGAATATCTGTTGTGCCGCGATCCCAATAGCCAGAACGAGCTGGCGATGGTGATTTTCCATGCGATGGAAAGCTACCAAAACCCATGGCATTACAACCAGTTTTCTGCAGAGGGCGGAGATGATCCGCTGATGGTGGAAGGGGGTTTTGAGTAG |
STM2330, STY2560, SEN2312 |
STM2330 |
|
|
lrhA |
STY2560 |
|
|
lrhA |
SPA0534 |
|
|
lrhA |
SEN2312 |
|
|
100 |
100 |
100 |
100 |
|
16 |
1 |
1 |
1 |
16 |
CHIP6_0454 |
ATCGCTAGGGAGTTGTTGAGATGAAAATGGATACCCGACATTCCGCATTATATTACTTAATAGTTTTTCTATTCCTGGCCCTACCCGCCACAGCATCGTGGGCGAGCGTTACTATTTTGGGTAGCCGAATAATTTACCCATCAACAGCCTCCTCCGTAGATGTGCAGTTAAAAAATAATGATGCAATACCTTATATCGTACAAACCTGGTTTGACGATGGCGATATGAATACCAGCCCGGAAAATAGCAGCGCGATGCCATTGATTGCCACGCCGCCGGTATTTCGTATTCAACCCAAAGCAGGCCAGGTTGTACGCGTAATTTATAACAACACGAAAAAATTGCCGCAGGATCGTGAGTCAGTATTCTGGTTTAACGTATTACAGGTACCACCAACGAATATTGGCAGCGACAGCGGGCAAAATAAAATGTTGGTGATGCTGCGCTCAAGAATAAAACTTTTCTATCGTCCTGACGGGCTAGGTAAACCTGATAATCTGGCGAAAAAACTACAGATTAAAACGGTAAATAAGGGTTCCGGAAAAAGCGGTATTGTTATTGTTAATCCGCAGCCCTGGTTTGCCTCTTTAAGTAACCTGAATGTAAAAGTGAACGGCGCTTCGTATAACCTGGATGCTGACATGATTGCCCCTTTCTCCAGTCAAACCTGGTGGCTGCCGGGCAAACGGTCACTCAAATCCTTCTCCGGTACAGTCACCGTTACTTTGGTTAACGACCTGGGCGCAAGGATAAGCGAGAGCTACGATGTCCCCCACCATTAA |
STM0339, STY0372, SEN0322 |
STM0339 |
|
|
stbB |
STY0372 |
|
|
stbB |
SPA2380 |
|
|
stbB |
SEN0322 |
|
|
100 |
100 |
100 |
100 |
|
17 |
1 |
1 |
1 |
17 |
CHIP6_4011 |
AAAGATTTTGGGAGCAAGCGATGCGCAAAGTTACCGCTGCTGTTATGGCCTCAACGCTGGCATTCAGTTTTTTAAGCCACGCAGCTGAAGTTGTTACAAGCGATAACTGGCACCCCGGTGACGGGGCCACGCAGCGTAGCGCGCAAAATCATATGTTTGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCAAGGCACGAACAGCCTCCTGTTAATGTTAGCGAAATGGAGACAATGCATCGGCTTGTCACCGCAGAAAAATTTGATGAAAGCGCTGTGCGCGCTCAGGCAGAAAAAATGGCGCAAGAGCAGGTTGCCCGCCAGGTCGAAATGGCCCGCGTGCGTAACCAGATGTATCGCCTGTTAACGCCGGAGCAGCAAGCGGTTTTGAATGAAAAGCATCAGCAACGAATGGAGCAACTGCGCGACGTGGCGCAATGGCAAAAAAGTTCATCGTTGAAATTATTGAGTAGTAGCAACTCACGTTCCCAGTAA |
STM4060, STY3811, SEN3850 |
STM4060 |
|
|
cpxP |
STY3811 |
|
|
cpxP |
SPA3903 |
|
|
cpxP |
SEN3850 |
|
|
100 |
100 |
100 |
100 |
|
18 |
1 |
1 |
1 |
18 |
CHIP6_2284 |
GCCTGATTTGGTGGAGAAAGTTGATGCGTGATATTCAGATGGTTCTTGAGCGTTGGGGGGCATGGGCGGCGAGTGATAGCTCAGGAGTGGACTATTCGCCTATAGCTGCTGGGTTTAAAGGGCTTCTTCCCTATACCTGCAAGACACGTGTGGCTTGTTCTGATAATGACGCATTAATTGTTGAGGGGTGTCTTGCTCGTTTAAAGCAAAAAAGGCCTGATGAGCATTCGCTTCTTGTGGCACATTATTTATACAGAATATCCAAGCGTAAGATTGCAAAGGTGCGTGGGAAGGATGAGAAATTGGTACGTATAGAAATACAGTTAGCCGAAGGATTTATTGATGGCTGCCTTTCAATGCTGGATCTAACAT |
STM2239 |
STM2239 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
100 |
60 |
60 |
60 |
|
19 |
1 |
1 |
1 |
19 |
CHIP6_2581 |
GCTCGTTAGGGCATCTTTTTATGCAGCAACCTGTTGTACGCATTGGAGAGTGGCTGGTTACACCTTCTGTTAATCAGATCAGTCGTCAGGGACGCCAGATTACTCTTGAACCACGGCTGATCGATCTTCTGATGTATTTTGCGCATCACCCGGATGAAGTGTTAAGCCGGGATAACATTATTGATCATGTCTGGATGCGCACCATCGTGACCAACCATGTTGTCACCCAAAGCATTTCTGAACTACGCAAATCATTAAGAGATGGCGGAGACAGCAATGCTGAATACATCGTTACCGTACCTAAACGCGGCTATAAGCTGACGGCGCCGGTTATCTGGTGCGAAGAAAATAGCGATGAGATCGATAATTCATCAACGTCGCCGCCGCCGCCGATCGCAGCGACGAATGCAGAACCGACGGAGGGGGTTACTGCCGCTACGCCTGTGCCGCCCGCCTCTTTGCAAACGCCGACTAAAAAGGCGAAAAAGCCGCGTATTGCCGCTTTCTGGACGTGGGTGATGTTCCTGCTCTCGCTGGCGACGCTGGTGGTGTTTATCGTGATGTCGGTGGTAGATCATAATGCCGCGGTAACAAAAACGCGGTTATTACTTAACCCACGAGATATAGATGTTCGTTTTGAAGGCGGCAATTCCTGTAATAACTGGGTCTCGCAGGAGTCCTACGCCATCGGTCTGGGCGGCTTAATCACCGACCTGCTGAACACCTACTCGACTTTTATGGTGCACGATAAAACCAATTACCGGGTCAATGAGCCAAGCAGCTCCGGTAAGACGTTAACCATTCAGTTTGTCAATCAGCGCCACTATCGGGCGCAGCAGTGCTTTATGTCTGTAGTGCTCATTGATAACGCCGATGGTTCAACCATGCTGGATAAGCGTTATTTCGTCACCAATACTAACCAGTTGTCCATCCAGGATGATCTGTTTAATAGCCTGTCTTTCGTTTTAACACAGCCCTGGCCTAATCGTATGCGAGAACAACTGGCCCTGTTCAGAACGCCGCAAAATACCGCACTGATGCGTTTTTATGAGGCGCGCCAGCTTATTCTGAGCGGCGATGCGCAGGCGCTAGGTAAAGCCAGCGATATTCTGAATGGCATTATTAAGGAAACGCCTGATTTCAACTATGCCTATGAATATAAAGTGCTGGTAGATGTATTACGGCAATCACAGCAGC |
STM2557, STY2804, SEN2537 |
STM2557 |
|
|
cadC |
STY2804 |
|
|
cadC |
SPA0309 |
|
|
cadC |
SEN2537 |
|
|
100 |
100 |
100 |
100 |
|
20 |
1 |
1 |
2 |
1 |
CHIP6_4402 |
ATCAGTAGTAAAGATAACCATAATCACACGTTGGTGTTTACAGGCAAGGGCGGAAAGTATTTTGTTATTTGCCTTGTGAATTTCTTGTTGACGTGTATCACGTTGGGAATCTATGCGCCGTGGGCGATGGTGAAATGTCGACGTTATATTTATACTAACATGACGCTAAACAATCAGCCTTTTGCTTACAAAGCCACGGGCGGCGCATTATTTATTAGTGTGTTGTTAGTTTTTATTATTTATATTGTTAGCCTCTCTCTTATTGAACACGGTCATCCCGGTCTCGGTTTTACGCTATTCGGCTTATTAATTGCGATTATTCCTTTTATGGCGGTGAAAGGATTACAGTATCAGGCGATGATGACTTCGCTTAATGGCGTACATTTTGGATTCCAGTGTTCCATGCGGCGCGCCTGGTGGTACATGTTCGCTCTTCCTGTACTCCTGATGGTGGCGCTTTATATTGTTCTTTATATTATCTCACTGGTAACCATCGCCGTCGGCGGTTTAGTGTTCAGTATCGTTTTTCTCGGTTTGCTGGCTATTATTGGGATAGGGGTCATTAACGGTATTACCTACAGCAAATGGATGACCTTGTTTGGTAATGGCGCAAACTTTGGCATTCATCGTTTCTCGATTCAGGTTAATGTTAAAACGTGCATCAGAGGGTGCGTGTTGGCAATGTTGACCCTTTTCCCTTTTGCTGTCGTGATTGGTTATCTAATCGCGCCGGTGTTCACCGACATGATTCTTTTGAGTATGATGGGGAATGCGCAGGCAGGAGGGGCGCTTATTCTGCAATATTATGGCCAGATAATGGCATGTTATTTCCTCTATTTTCTCGCGATTATTGTGGTAACCAGTTACTTATATGTGGCGTTACGCAACCTGTTTTTAAACAATTTGTCACTGGCGAACGATTCGATTCGTTTTCATTCCTCTGTCACTGCACACGGTATGCTGTGGCGGTTACTGGTGGTGTTTGTGATTTCCGGCGTGACCTTAGGGCTGGCTTATCCGTGGTTGAAAATTTGGCTGGTGAGCTGGCTGGCGCAGAATACACAGGTCCAGGGCGATCTGGATTCGCTTGAGTTAACCAATGATGAGAAGCCGCTGGAAAACAGCCCGCTAATGTGGATTTCTCGTGGCATTATGC |
STM4474, STY4813, SEN4227 |
STM4474 |
|
|
yjgN |
STY4813 |
|
|
|
SPA4275 |
|
|
yjgN |
SEN4227 |
|
|
100 |
100 |
100 |
100 |
|
Total number of rows: 17328
Table truncated, full table size 14423 Kbytes.
Supplementary data files not provided |
|
|
|
|
|