|
| Status |
Public on Dec 07, 2010 |
| Title |
Definition of Salmonella rpoN regulon |
| Platform organism |
Salmonella enterica |
| Sample organism |
Salmonella enterica subsp. enterica serovar Typhimurium |
| Experiment type |
Expression profiling by array
Genome binding/occupancy profiling by array
|
| Summary |
comparison of total RNA profiles obtained from wt and rpoN mutant strains in presence of the dctDAAA peptide and chIP/chip experiments to define rpoN targeted DNA segments
|
| |
|
| Overall design |
chIP/chip using rabbit anti-RpoN under various conditions and transcriptional profiling in rich medium with dctDAAA peptide
|
| |
|
| Contributor(s) |
Porwollik S, Hoover T, Frye J, Karls A, McClelland M |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Dec 03, 2010 |
| Last update date |
Mar 22, 2012 |
| Contact name |
Michael McClelland |
| E-mail(s) |
mcclelland.michael@gmail.com
|
| Phone |
858-336-9554
|
| Organization name |
University of California, Irvine
|
| Department |
Microbiology & Molecular Genetics
|
| Street address |
132 Med Surge I
|
| City |
Irvine |
| State/province |
CA |
| ZIP/Postal code |
92697 |
| Country |
USA |
| |
|
| Platforms (2) |
|
| Samples (9)
|
| GSM634858 |
CC2_wtpPBHP92_vs_rpoNpPBHP92_7DE1400 |
| GSM634859 |
CC2_rpoNNBrich_1_vs_wtNBrich_1_7DE1577 |
| GSM634860 |
CC2_rpoNNBrich_2_vs_wtNBrich_2_7DE1578 |
| GSM634861 |
RR2_wtdctDAAA_1_Cy3_ch1_rpoNdctDAAA_1_7DE1157 |
| GSM634862 |
RR2_wtdctDAAA_2_Cy3_ch1_rpoNdctDAAA_2_7DE1158 |
| GSM634863 |
RR2_wtdctDAAA_3_Cy3_ch1_rpoNdctDAAA_3_7DE1159 |
|
| Relations |
| BioProject |
PRJNA135729 |
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