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Platform GPL11313 Query DataSets for GPL11313
Status Public on Mar 31, 2011
Title NImbleGen Chromosome 19 Tiling Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site
 
Description Format: 385K
Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 105
 
Submission date Dec 14, 2010
Last update date Mar 31, 2011
Contact name Xiwei Wu
E-mail(s) xwu@coh.org
Organization name City of Hope National Medical Center
Department Computational and Quantitative Medicine
Street address 1500 E. Duarte Rd.
City Duarte
State/province CA
ZIP/Postal code 91010
Country USA
 
Samples (17) GSM639477, GSM639478, GSM639479, GSM639480, GSM639481, GSM639482 
Series (2)
GSE26020 Crosstalk between gene body DNA methylation, H3K9me3 and H3K36me3 chromatin marks and transcription
GSE26040 Relationship between gene body DNA methylation and intragenic H3K9me3 and H3K36me3 chromatin marks

Data table header descriptions
ID Probe ID
CHR Chromosomal location
RANGE_GB GenBank Accession number
RANGE_START Chromosomal start position of oligo
RANGE_END Chromosomal end position of oligo
SEQUENCE Sequence of oligo

Data table
ID CHR RANGE_GB RANGE_START RANGE_END SEQUENCE
CHR19FS000040285 chr19 NC_000019.8 40285 40341 GGTTACAAGGATCTAAGAAGCACCAGTGGGTCTCTAACATCTAGTGGTACTAATTAA
CHR19FS000050544 chr19 NC_000019.8 50544 50603 TTCCACTCTGAAAAGGAGATGTGTGATCTCGTCTATTTCCATCCTATTTGAAAACCAGAT
CHR19FS000060860 chr19 NC_000019.8 60860 60909 ACCCCTTTCCTGCTCACACAACCACAACCTGCAGTTATTACCTACTGTTA
CHR19FS000060865 chr19 NC_000019.8 60865 60921 TTTCCTGCTCACACAACCACAACCTGCAGTTATTACCTACTGTTAGGCTTAAAATAA
CHR19FS000197010 chr19 NC_000019.8 197010 197059 GAGCAATGTGGGTGTTATATTTTGGGTGTCATGTGTGCCTTAGGAATGCT
CHR19FS000197190 chr19 NC_000019.8 197190 197239 TCTCTGCCCTTGATTATTCACGGCTGCAACCGGGAAAGATTTAATTCACC
CHR19FS000198105 chr19 NC_000019.8 198105 198154 CACTGCTGGGCCCTCTTGCTTGCAGTGTAGTCGGGGCATGCCCTCTTCTG
CHR19FS000203685 chr19 NC_000019.8 203685 203734 CCCTATCAGTGCCCATCCACACTGGATCATGCTTATCTCAGTGTCTTCCA
CHR19FS000203740 chr19 NC_000019.8 203740 203789 ACCCTCACAGATATGCCCAGCAATTGTGTTTGACCAGCTGTGTGTGTCTC
CHR19FS000203950 chr19 NC_000019.8 203950 204006 CGTGTTTGACCAGCTGTGTGTGTCCTTAATCCGATCAAGTAGATGTCTAAAATTAAC
CHR19FS000204230 chr19 NC_000019.8 204230 204293 CAGGATGAAAGCTATGAAATCTCTATTTCTGTTTGTACATCTATTAATGTATGTTATGTATATG
CHR19FS000204477 chr19 NC_000019.8 204477 204532 AATAAGATTAATATAATATTTTTGGGGTAGCCATTGTGGGTTATCAGATTCTAGTC
CHR19FS000204482 chr19 NC_000019.8 204482 204537 GATTAATATAATATTTTTGGGGTAGCCATTGTGGGTTATCAGATTCTAGTCTTGTT
CHR19FS000204672 chr19 NC_000019.8 204672 204721 TGAAGGTCTTCAACCCTGGAACAAAGTTAGAAGAGGAAGGTTTTGATCCC
CHR19FS000204802 chr19 NC_000019.8 204802 204851 ACAAAGACATGAGTGAATCTTGCATGCACATTGCTAGGTGGCAGAAGACA
CHR19FS000204922 chr19 NC_000019.8 204922 204971 AAGCCATTGGCTCCATAGGGTGGAGGTTTGAGGCATTCCATATGATACTT
CHR19FS000205017 chr19 NC_000019.8 205017 205068 ATTTTACGGCCAAATGGTTAAAGCAAACTCTATTCAAATTACATAAAATTAC
CHR19FS000205267 chr19 NC_000019.8 205267 205317 CCTCCATGGGGTAAGTGAATTCCATTCTCACAGGAATAGATAATTCCTGCA
CHR19FS000205437 chr19 NC_000019.8 205437 205486 CTGAGGCCCCATCAGATGCAACTGCCCAATCTGAGACATTCCAGCCACCA
CHR19FS000205512 chr19 NC_000019.8 205512 205573 TTACTTAAACATCAGAATATTTATGCCTACGCATAATATTCAGAATACGCAGCCTCAGGTAT

Total number of rows: 385039

Table truncated, full table size 39963 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL11313_2006-09-22_HG18_CHR19_FT.ndf.gz 20.0 Mb (ftp)(http) NDF
GPL11313_2006-09-22_HG18_CHR19_FT.pos.gz 2.7 Mb (ftp)(http) POS

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