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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 20, 2012 |
| Title |
NimbleGen custom Mouse MIRTA Array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Mus musculus |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
see manufacturer's web site www.nimblegen.com
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| |
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| Description |
Annotation in this record based on NCBI mouse build 37.
Array build is based on potentially imprinted genes, 100nt spacing
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| Submission date |
Jan 19, 2011 |
| Last update date |
Dec 20, 2012 |
| Contact name |
Florian M Pauler |
| E-mail(s) |
florian.pauler@ist.ac.at
|
| Phone |
+43 2243 9000-7434
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| Organization name |
IST Austria
|
| Lab |
Simon Hippenmeyer
|
| Street address |
Am Campus 1
|
| City |
Klosterneuburg |
| ZIP/Postal code |
3400 |
| Country |
Austria |
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|
| Samples (65)
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GSM657895, GSM657896, GSM657897, GSM657898, GSM657899, GSM657900
GSM657901, GSM657902, GSM657903, GSM657904, GSM657905, GSM657906, GSM657907, GSM657908, GSM657909, GSM657910, GSM657911, GSM657912, GSM657913, GSM657914, GSM657915, GSM657916, GSM657917, GSM657918, GSM657919, GSM657920, GSM657921, GSM657922, GSM657923, GSM657924, GSM657925, GSM657926, GSM657927, GSM657928, GSM657929, GSM657930, GSM657931, GSM657932, GSM657933, GSM657934, GSM657935, GSM657936, GSM657937, GSM657938, GSM657939, GSM657940, GSM657941, GSM657942, GSM657943, GSM657944, GSM657945, GSM657946, GSM657947, GSM657948, GSM657949, GSM657950, GSM1017448, GSM1017449, GSM1017450, GSM1017451, GSM1017452, GSM1017453, GSM1020288, GSM1108305, GSM1428526
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| Series (3) |
| GSE26718 |
Macro ncRNAs are abundant in imprinted regions and directly regulated by DNA methylation [tiling array] |
| GSE41444 |
Airn transcriptional overlap but not its lncRNA products induce imprinted Igf2r silencing. |
| GSE75454 |
Transcript identification and quantification on Mouse Imprinted Region Tiling Array (MIRTA) |
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| Data table header descriptions |
| ID |
PROBE_DESIGN_ID |
| DESIGN_NOTE |
|
| SEQ_ID |
|
| SEQUENCE |
|
| PROBE_CLASS |
|
| PROBE_ID |
|
| POSITION |
|
| CHROMOSOME |
chromosome |
| RANGE_GB |
GenBank Accession |
| RANGE_START |
start position |
| LENGTH |
probe length |
| RANGE_END |
end position |
| Data table |
| ID |
DESIGN_NOTE |
SEQ_ID |
SEQUENCE |
PROBE_CLASS |
PROBE_ID |
POSITION |
CHROMOSOME |
RANGE_GB |
RANGE_START |
LENGTH |
RANGE_END |
| 6379_0515_0001 |
target_tm:76.00;probe_tm:75.94 |
chr6:3300000-7300000 |
GAAAGATCTCTTGAAAATGACAAGAGCGATGGTGGGAGAGAAGGAGAGAA |
experimental |
CHR6FS006039322 |
6039322 |
chr6 |
NC_000072.5 |
5542629 |
57 |
5542685 |
| 6379_0517_0001 |
target_tm:76.00;probe_tm:73.69 |
chr6:3300000-7300000 |
TAACAGTGCTTTGTAGATCCCTAAAATATAGAGATTTGGACTTTAATACCTCATCCTC |
experimental |
CHR6FS004339886 |
4339886 |
chr6 |
NC_000072.5 |
5542629 |
57 |
5542685 |
| 6379_0519_0001 |
target_tm:76.00;probe_tm:84.96 |
chr18:12600000-13600000 |
GACAGGACAGCAGCTTGTGCCCCATGTGCCCATGCTGGATGGCGGAGGGG |
experimental |
CHR18FS012841499 |
12841499 |
chr18 |
NC_000084.5 |
12786133 |
59 |
12786191 |
| 6379_0521_0001 |
target_tm:76.00;probe_tm:75.70 |
chr7:64800001-70800000 |
TGGTACCGTTGTATACCATTTTGTTATCCCTAATTCCAAAAGGACCGACTGG |
experimental |
CHR7FS066795828 |
66795828 |
chr7 |
NC_000073.5 |
69545679 |
58 |
69545736 |
| 6379_0523_0001 |
target_tm:76.00;probe_tm:77.58 |
chr15:71100001-74100000 |
GAAGCACAAAGTGCCCTCCCCTCCAAGTTGAGGAAATTGGAAATTTGGCA |
experimental |
CHR15FS072038720 |
72038720 |
chr15 |
NC_000081.5 |
73598027 |
57 |
73598083 |
| 6379_0525_0001 |
target_tm:76.00;probe_tm:72.36 |
chr10:96000000-98500000 |
AAGTTCATTTGTCTGCTGTAGTATACGAGGTATAGATATTTTCCCTAAAAAGTATC |
experimental |
CHR10FS096687477 |
96687477 |
chr10 |
NC_000076.5 |
96737102 |
57 |
96737158 |
| 6379_0527_0001 |
target_tm:76.00;probe_tm:78.40 |
chr15:71100001-74100000 |
AGTTCTGGTTAGCTCTGGCATGTAATGCTCACACTATGCAGCCCAGGACT |
experimental |
CHR15FS073681400 |
73681400 |
chr15 |
NC_000081.5 |
73598027 |
57 |
73598083 |
| 6379_0529_0001 |
target_tm:76.00;probe_tm:80.86 |
chr15:71100001-74100000 |
GGGGTCACGGGAAGGTAATCCCCCAGCCCAAAGGAAACTCTTCCTGGAAT |
experimental |
CHR15FS074092559 |
74092559 |
chr15 |
NC_000081.5 |
73598027 |
57 |
73598083 |
| 6379_0531_0001 |
target_tm:76.00;probe_tm:75.70 |
chr17:12200000-13300000 |
TAAATAGAAGGCTTTCAAAGCATCATTTAAACTGCTGATGCCTGAGGGTGGG |
experimental |
CHR17FS013242835 |
13242835 |
chr17 |
NC_000083.5 |
12870596 |
50 |
12870645 |
| 6379_0533_0001 |
|
RANDOM_GC43_DUAL |
TACTTTAGCTCCATCATCGGTTTAACATCGCACTAAGCGGAGGAGTTTGG |
|
RANDOM00031249 |
0 |
|
|
|
|
|
| 6379_0535_0001 |
target_tm:76.00;probe_tm:75.52 |
chr10:96000000-98500000 |
TAGCAATCAACTAAATACAAACACCGGAGCAACACTGCATTGTGGGTTTGATTTATCTCAT |
experimental |
CHR10FS097780878 |
97780878 |
chr10 |
NC_000076.5 |
96737102 |
57 |
96737158 |
| 6379_0537_0001 |
|
RANDOM_GC43_DUAL |
GACACTCTCGAGCGCACTAGGTCAACAATGAGTTCGCTCAGTGTAGTGCT |
|
RANDOM00019409 |
0 |
|
|
|
|
|
| 6379_0539_0001 |
|
RANDOM_GC43_DUAL |
AAAGAGCCTCGCCCTGTCGGATTTTAATTCCATGGCTGGAATACATGAAA |
|
RANDOM00074324 |
0 |
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|
| 6379_0541_0001 |
target_tm:76.00;probe_tm:75.70 |
chrX:98400000-103400000 |
TCAAAAAGGCTTTATGGAGTCTCTACAATGTGCAGAGGATAATGCTGTAGGG |
experimental |
CHRXFS098428733 |
98428733 |
chrX |
NC_000086.6 |
100003797 |
50 |
100003846 |
| 6379_0543_0001 |
target_tm:76.00;probe_tm:72.36 |
chr15:96300000-97300000 |
TGAACGAACATGGAAGAAACCATTGTCATTTGCTATAAGGAAAAACAAAACACAAA |
experimental |
CHR15FS096414599 |
96414599 |
chr15 |
NC_000081.5 |
96456198 |
50 |
96456247 |
| 6379_0545_0001 |
|
RANDOM_GC43_DUAL |
TCATCGTACTATGCTCAATGAAGTATGAAGTGTCATAAAGCTACTAATGGCATTATAAATAGAGACA |
|
RANDOM00072870 |
0 |
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|
| 6379_0547_0001 |
target_tm:76.00;probe_tm:81.68 |
chr6:3300000-7300000 |
CGGGCAGGGAGGGGTTCAGGCACTTGCTAAGATGCTAAGGGAGATGCCAA |
experimental |
CHR6FS005444188 |
5444188 |
chr6 |
NC_000072.5 |
5542629 |
57 |
5542685 |
| 6379_0549_0001 |
target_tm:76.00;probe_tm:75.91 |
chr15:71100001-74100000 |
CAAGTTTAAAGGTAGATTCTGATACCTGTACAAAAATGTGATAGGGCAGCCCACACA |
experimental |
CHR15FS071927499 |
71927499 |
chr15 |
NC_000081.5 |
73598027 |
57 |
73598083 |
| 6379_0551_0001 |
target_tm:76.00;probe_tm:80.04 |
chr7:6260000-7260000 |
AGCCTTCACAGATCAGGAGTCGTGCATCTGTCGAGGCTGTTCTTGCCACA |
experimental |
CHR7FS006929284 |
6929284 |
chr7 |
NC_000073.5 |
6541406 |
55 |
6541460 |
| 6379_0553_0001 |
target_tm:76.00;probe_tm:77.58 |
chr7:117500000-118500000 |
TCAAAGGTCATGGTTTCTTCTCAGCAGTTTTCTACAGGGTGGACGTCCCT |
experimental |
CHR7FS118480916 |
118480916 |
chr7 |
NC_000073.5 |
118047187 |
57 |
118047243 |
Total number of rows: 392778
Table truncated, full table size 68875 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL11618_070914_MIRTA_Barlow_ChIP.ndf.gz |
18.8 Mb |
(ftp)(http) |
NDF |
| GPL11618_070914_MIRTA_Barlow_ChIP.pos.gz |
2.6 Mb |
(ftp)(http) |
POS |
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