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Series GSE26718 Query DataSets for GSE26718
Status Public on Feb 25, 2017
Title Macro ncRNAs are abundant in imprinted regions and directly regulated by DNA methylation [tiling array]
Organism Mus musculus
Experiment type Non-coding RNA profiling by genome tiling array
Summary Imprinted macro ncRNAs such as Airn play an important role in silencing protein-coding genes in cis, macro ncRNAs could be a common feature in all imprinted gene clusters. By applying the RNA Expression on Tiling Array (RETA) technique, macro ncRNAs were found to be abundant in 26 known mouse genomic regions containing imprinted genes were detected.
All well-known imprinted macro ncRNAs were up-regulated upon depletion of DNA methylation.
 
Overall design Surveying imprinted macro non-coding RNAs in 26 imprinted mouse regions from different mouse cells and tissues
 
Contributor(s) Huang R, Tamir IM, Barlow DP, Pauler FM
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Submission date Jan 19, 2011
Last update date Feb 25, 2017
Contact name Florian M Pauler
E-mail(s) florian.pauler@ist.ac.at
Phone +43 2243 9000-7434
Organization name IST Austria
Lab Simon Hippenmeyer
Street address Am Campus 1
City Klosterneuburg
ZIP/Postal code 3400
Country Austria
 
Platforms (1)
GPL11618 NimbleGen custom Mouse MIRTA Array
Samples (58)
GSM657895 CCE Day0 (Total cDNA, 1st biological replicate)
GSM657896 CCE Day0 (Total cDNA, 2nd biological replicate)
GSM657897 CCE Day5 (Total cDNA, 1st biological replicate)
This SubSeries is part of SuperSeries:
GSE75454 Transcript identification and quantification on Mouse Imprinted Region Tiling Array (MIRTA)
Relations
BioProject PRJNA136125

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE26718_RAW.tar 911.8 Mb (http)(custom) TAR (of BEDGRAPH, PAIR, TXT, WIG)
Processed data included within Sample table
Processed data provided as supplementary file
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