NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL13123 Query DataSets for GPL13123
Status Public on Feb 10, 2011
Title NimbleGen_GenAu MB BCELL v5.0
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen
Manufacture protocol as described in www.nimblegen.com
 
Description Custom array.
genomic regions of potential pax5 target genes from mm8
including IGH and surrounding genes
isothermal tiling oligos at 100bp
designname: 2007-06-28_imp_igh_2_ChIP
designid: 6006
 
Contributor(s) McManus S, Ebert A, Novatchkova M, Busslinger M
Submission date Feb 04, 2011
Last update date Feb 12, 2011
Contact name Meinrad Busslinger
E-mail(s) busslinger@imp.ac.at
Phone 00431-79730
Organization name Instutute of Molecular Pathology
Street address Dr. Bohrgasse 7
City Vienna
ZIP/Postal code 1030
Country Austria
 
Samples (35) GSM668137, GSM668138, GSM668139, GSM668140, GSM668141, GSM668142 
Series (3)
GSE27074 IGH analysis in pro-B cells with H3K4me3, H3K4me2, H3K9ac, H3K27me3, Pax5 and CTCF [ChIP-chip]
GSE27215 IGH analysis in pro-B cells with H3K4me3, H3K4me2, H3K9ac, H3K27me3, Pax5 and CTCF
GSE28373 The transcription factor Pax5 regulates its target genes by recruiting chromatin-modifying proteins in committed B cells

Data table header descriptions
ID PROBE_DESIGN_ID
PROBE_ID
CHROMOSOME Chromosomal location (NCBI mouse build 36)
RANGE_GB Chromosome accession.version
SPOT_ID
RANGE_START Chromosomal position relative to RANGE_GB (NCBI mouse build 36)
Direction Chromosomal direction (NCBI mouse build 36)
LENGTH length of oligo probe
SEQUENCE Sequence of oligo probe

Data table
ID PROBE_ID CHROMOSOME RANGE_GB SPOT_ID RANGE_START Direction LENGTH SEQUENCE
6006_0001_0001 RANDOM00005624 null null 0 + TAATTCCCTAGAGGTGTTGCTAACTCCCGAAGATGGAATTATCATTGTAATGCTGTGAAA
6006_0001_0085 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0087 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0089 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0091 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0093 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0095 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0097 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0099 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0101 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0103 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0105 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0107 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0109 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0111 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0113 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0115 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0117 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0119 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
6006_0001_0121 CPK6 null null 0 + TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN

Total number of rows: 392778

Table truncated, full table size 47085 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL13123_2007_06_28_imp_igh_2_ChIP.ndf.gz 17.4 Mb (ftp)(http) NDF
GPL13123_2007_06_28_imp_igh_2_ChIP_mm8.pos.gz 4.9 Mb (ftp)(http) POS

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap