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Status
Public on Mar 03, 2011
Title
BaSysBio Bacillus subtilis T2 385K array [090325_CBS_DTU_Bsub_T2]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Bacillus subtilis subsp. subtilis str. 168
Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Description
AL009126.3 090325_CBS_DTU_Bsub_T2.ndf 090325_CBS_DTU_Bsub_T2.pos
Submission date
Feb 14, 2011
Last update date
Apr 07, 2014
Contact name
Ulrike Mäder
E-mail(s)
ulrike.maeder@uni-greifswald.de
Organization name
University Medicine Greifswald
Department
Functional Genomics
Street address
F.-L.-Jahn-Str. 15A
City
Greifswald
ZIP/Postal code
D-17489
Country
Germany
Samples (36)
GSM675099 , GSM675100 , GSM675101 , GSM675102 , GSM675103 , GSM675104
GSM677884 ,
GSM677885 ,
GSM677886 ,
GSM677887 ,
GSM685154 ,
GSM685155 ,
GSM685156 ,
GSM685157 ,
GSM685158 ,
GSM685159 ,
GSM1576704 ,
GSM1576705 ,
GSM1591524 ,
GSM1591525 ,
GSM1591526 ,
GSM1591527 ,
GSM1591528 ,
GSM1591529 ,
GSM1591530 ,
GSM1591531 ,
GSM1591532 ,
GSM1591533 ,
GSM1591534 ,
GSM1591535 ,
GSM1591536 ,
GSM1591537 ,
GSM1591538 ,
GSM1591539 ,
GSM1591540 ,
GSM1591541
Series (8)
GSE27303
Transcriptome analysis of a Bacillus subtilis mutant defective in the transcription termination factor Rho.
GSE27419
Tiling array hybridizations of genomic DNA from Bacillus subtilis 168.
GSE27650
Bacillus subtilis SigA ChIP-chip (BsubT1 array)
GSE27652
Bacillus subtilis SigA ChIP-chip
GSE27665
Bacillus subtilis SigA ChIP-chip (BsubT2 array)
GSE64671
Genome-wide identification of Bacillus subtilis Zur-binding sites.
GSE65272
Bacillus subtilis WalR (YycF) ChIP-chip Bacillus subtilis; Bacillus subtilis subsp. subtilis str. 168
GSE65273
A genome-wide analysis of PhoP~P binding to chromosomal DNA reveals several novel features of the PhoPR-mediated phosphate limitation response in Bacillus subtilis
Data table header descriptions
ID
SEQUENCE
Probe sequences, 5' to 3'
X
Position on array, X
Y
Position on array, Y
RANGE_GB
AL009126.3
RANGE_START
Probe start on AL009126.3 (smallest position)
RANGE_END
Probe end on AL009126.3 (largest position)
RANGE_STRAND
Probe strand on AL009126.3 (+/-)
SeqS
The sequence of each probe was BLAST-aligned against the whole chromosome sequence and the SeqS was computed (Wei et al., 2008 Nucl. Acids Res. 36, 2926-2938).
Data table
ID
SEQUENCE
X
Y
RANGE_GB
RANGE_START
RANGE_END
RANGE_STRAND
SeqS
Bsub_1_65_p1
ATCTTTTTCGGCTTTTTTTAGTATCCACAGAGGTTATCGACAACATTTTCACATTACCAACCCC
724
586
AL009126.3
1
65
+
2
Bsub_23_80_p3
ATCCACAGAGGTTATCGACAACATTTTCACATTACCAACCCCTGTGGACAAGGTTTTT
1
341
AL009126.3
23
80
+
2
Bsub_45_97_p5
ATTTTCACATTACCAACCCCTGTGGACAAGGTTTTTTCAACAGGTTGTCCGCT
401
749
AL009126.3
45
97
+
2
Bsub_67_120_p7
TGGACAAGGTTTTTTCAACAGGTTGTCCGCTTTGTGGATAAGATTGTGACAACC
564
790
AL009126.3
67
120
+
1
Bsub_89_147_p9
TTGTCCGCTTTGTGGATAAGATTGTGACAACCATTGCAAGCTCTCGTTTATTTTGGTAT
157
229
AL009126.3
89
147
+
1
Bsub_111_170_p11
TGTGACAACCATTGCAAGCTCTCGTTTATTTTGGTATTATATTTGTGTTTTAACTCTTGA
301
439
AL009126.3
111
170
+
1
Bsub_133_197_p13
CGTTTATTTTGGTATTATATTTGTGTTTTAACTCTTGATTACTAATCCTACCTTTCCTCTTTA
133
221
AL009126.3
133
197
+
1
Bsub_155_219_p15
GTGTTTTAACTCTTGATTACTAATCCTACCTTTCCTCTTTATCCACAAAGTGTGGATAAGTTGTG
559
931
AL009126.3
155
219
+
1
Bsub_177_241_p17
ATCCTACCTTTCCTCTTTATCCACAAAGTGTGGATAAGTTGTGGATTGATTTCACACAGCTTGTG
239
439
AL009126.3
177
241
+
1
Bsub_199_261_p19
ACAAAGTGTGGATAAGTTGTGGATTGATTTCACACAGCTTGTGTAGAAGGTTGTCCACAAGTT
676
172
AL009126.3
199
261
+
1
Bsub_221_281_p21
ATTGATTTCACACAGCTTGTGTAGAAGGTTGTCCACAAGTTGTGAAATTTGTCGAAAAGCT
672
916
AL009126.3
221
281
+
1
Bsub_243_307_p23
AGAAGGTTGTCCACAAGTTGTGAAATTTGTCGAAAAGCTATTTATCTACTATATTATATGTTTTC
352
806
AL009126.3
243
307
+
1
Bsub_265_329_p25
AAATTTGTCGAAAAGCTATTTATCTACTATATTATATGTTTTCAACATTTAATGTGTACGAATGG
495
257
AL009126.3
265
329
+
1
Bsub_287_351_p27
TCTACTATATTATATGTTTTCAACATTTAATGTGTACGAATGGTAAGCGCCATTTGCTCTTTTTT
732
180
AL009126.3
287
351
+
1
Bsub_309_373_p29
ACATTTAATGTGTACGAATGGTAAGCGCCATTTGCTCTTTTTTTGTGTTCTATAACAGAGAAAGA
134
578
AL009126.3
309
373
+
1
Bsub_331_395_p31
AAGCGCCATTTGCTCTTTTTTTGTGTTCTATAACAGAGAAAGACGCCATTTTCTAAGAAAAGGAG
360
184
AL009126.3
331
395
+
1
Bsub_353_410_p33
GTGTTCTATAACAGAGAAAGACGCCATTTTCTAAGAAAAGGAGGGACGTGCCGGAAGA
571
571
AL009126.3
353
410
+
1
Bsub_375_433_p35
GCCATTTTCTAAGAAAAGGAGGGACGTGCCGGAAGATGGAAAATATATTAGACCTGTGG
388
314
AL009126.3
375
433
+
1
Bsub_397_448_p37
GACGTGCCGGAAGATGGAAAATATATTAGACCTGTGGAACCAAGCCCTTGCT
389
969
AL009126.3
397
448
+
1
Bsub_419_475_p39
ATATTAGACCTGTGGAACCAAGCCCTTGCTCAAATCGAAAAAAAGTTGAGCAAACCG
202
940
AL009126.3
419
475
+
1
Total number of rows: 383238 Table truncated, full table size 46416 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL13168_090325_CBS_DTU_Bsub_T2.ndf.gz
21.7 Mb
(ftp) (http)
NDF
GPL13168_090325_CBS_DTU_Bsub_T2.pos.gz
21.7 Mb
(ftp) (http)
POS