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Platform GPL13168 Query DataSets for GPL13168
Status Public on Mar 03, 2011
Title BaSysBio Bacillus subtilis T2 385K array [090325_CBS_DTU_Bsub_T2]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Bacillus subtilis subsp. subtilis str. 168
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description AL009126.3
090325_CBS_DTU_Bsub_T2.ndf
090325_CBS_DTU_Bsub_T2.pos
 
Submission date Feb 14, 2011
Last update date Apr 07, 2014
Contact name Ulrike Mäder
E-mail(s) ulrike.maeder@uni-greifswald.de
Organization name University Medicine Greifswald
Department Functional Genomics
Street address F.-L.-Jahn-Str. 15A
City Greifswald
ZIP/Postal code D-17489
Country Germany
 
Samples (36) GSM675099, GSM675100, GSM675101, GSM675102, GSM675103, GSM675104 
Series (8)
GSE27303 Transcriptome analysis of a Bacillus subtilis mutant defective in the transcription termination factor Rho.
GSE27419 Tiling array hybridizations of genomic DNA from Bacillus subtilis 168.
GSE27650 Bacillus subtilis SigA ChIP-chip (BsubT1 array)

Data table header descriptions
ID
SEQUENCE Probe sequences, 5' to 3'
X Position on array, X
Y Position on array, Y
RANGE_GB AL009126.3
RANGE_START Probe start on AL009126.3 (smallest position)
RANGE_END Probe end on AL009126.3 (largest position)
RANGE_STRAND Probe strand on AL009126.3 (+/-)
SeqS The sequence of each probe was BLAST-aligned against the whole chromosome sequence and the SeqS was computed (Wei et al., 2008 Nucl. Acids Res. 36, 2926-2938).

Data table
ID SEQUENCE X Y RANGE_GB RANGE_START RANGE_END RANGE_STRAND SeqS
Bsub_1_65_p1 ATCTTTTTCGGCTTTTTTTAGTATCCACAGAGGTTATCGACAACATTTTCACATTACCAACCCC 724 586 AL009126.3 1 65 + 2
Bsub_23_80_p3 ATCCACAGAGGTTATCGACAACATTTTCACATTACCAACCCCTGTGGACAAGGTTTTT 1 341 AL009126.3 23 80 + 2
Bsub_45_97_p5 ATTTTCACATTACCAACCCCTGTGGACAAGGTTTTTTCAACAGGTTGTCCGCT 401 749 AL009126.3 45 97 + 2
Bsub_67_120_p7 TGGACAAGGTTTTTTCAACAGGTTGTCCGCTTTGTGGATAAGATTGTGACAACC 564 790 AL009126.3 67 120 + 1
Bsub_89_147_p9 TTGTCCGCTTTGTGGATAAGATTGTGACAACCATTGCAAGCTCTCGTTTATTTTGGTAT 157 229 AL009126.3 89 147 + 1
Bsub_111_170_p11 TGTGACAACCATTGCAAGCTCTCGTTTATTTTGGTATTATATTTGTGTTTTAACTCTTGA 301 439 AL009126.3 111 170 + 1
Bsub_133_197_p13 CGTTTATTTTGGTATTATATTTGTGTTTTAACTCTTGATTACTAATCCTACCTTTCCTCTTTA 133 221 AL009126.3 133 197 + 1
Bsub_155_219_p15 GTGTTTTAACTCTTGATTACTAATCCTACCTTTCCTCTTTATCCACAAAGTGTGGATAAGTTGTG 559 931 AL009126.3 155 219 + 1
Bsub_177_241_p17 ATCCTACCTTTCCTCTTTATCCACAAAGTGTGGATAAGTTGTGGATTGATTTCACACAGCTTGTG 239 439 AL009126.3 177 241 + 1
Bsub_199_261_p19 ACAAAGTGTGGATAAGTTGTGGATTGATTTCACACAGCTTGTGTAGAAGGTTGTCCACAAGTT 676 172 AL009126.3 199 261 + 1
Bsub_221_281_p21 ATTGATTTCACACAGCTTGTGTAGAAGGTTGTCCACAAGTTGTGAAATTTGTCGAAAAGCT 672 916 AL009126.3 221 281 + 1
Bsub_243_307_p23 AGAAGGTTGTCCACAAGTTGTGAAATTTGTCGAAAAGCTATTTATCTACTATATTATATGTTTTC 352 806 AL009126.3 243 307 + 1
Bsub_265_329_p25 AAATTTGTCGAAAAGCTATTTATCTACTATATTATATGTTTTCAACATTTAATGTGTACGAATGG 495 257 AL009126.3 265 329 + 1
Bsub_287_351_p27 TCTACTATATTATATGTTTTCAACATTTAATGTGTACGAATGGTAAGCGCCATTTGCTCTTTTTT 732 180 AL009126.3 287 351 + 1
Bsub_309_373_p29 ACATTTAATGTGTACGAATGGTAAGCGCCATTTGCTCTTTTTTTGTGTTCTATAACAGAGAAAGA 134 578 AL009126.3 309 373 + 1
Bsub_331_395_p31 AAGCGCCATTTGCTCTTTTTTTGTGTTCTATAACAGAGAAAGACGCCATTTTCTAAGAAAAGGAG 360 184 AL009126.3 331 395 + 1
Bsub_353_410_p33 GTGTTCTATAACAGAGAAAGACGCCATTTTCTAAGAAAAGGAGGGACGTGCCGGAAGA 571 571 AL009126.3 353 410 + 1
Bsub_375_433_p35 GCCATTTTCTAAGAAAAGGAGGGACGTGCCGGAAGATGGAAAATATATTAGACCTGTGG 388 314 AL009126.3 375 433 + 1
Bsub_397_448_p37 GACGTGCCGGAAGATGGAAAATATATTAGACCTGTGGAACCAAGCCCTTGCT 389 969 AL009126.3 397 448 + 1
Bsub_419_475_p39 ATATTAGACCTGTGGAACCAAGCCCTTGCTCAAATCGAAAAAAAGTTGAGCAAACCG 202 940 AL009126.3 419 475 + 1

Total number of rows: 383238

Table truncated, full table size 46416 Kbytes.




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Supplementary file Size Download File type/resource
GPL13168_090325_CBS_DTU_Bsub_T2.ndf.gz 21.7 Mb (ftp)(http) NDF
GPL13168_090325_CBS_DTU_Bsub_T2.pos.gz 21.7 Mb (ftp)(http) POS

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