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| Status |
Public on Jan 26, 2015 |
| Title |
Bacillus subtilis WalR (YycF) ChIP-chip Bacillus subtilis; Bacillus subtilis subsp. subtilis str. 168 |
| Platform organism |
Bacillus subtilis subsp. subtilis str. 168 |
| Sample organisms |
Bacillus subtilis; Bacillus subtilis subsp. subtilis str. 168 |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
|
| Summary |
Identification of the specific WalR (YycF) binding regions on the B. subtilis chromosome during exponential and phosphate starvation growth phases. The data serves to extend the WalRK regulon in Bacillus subtilis and its role in cell wall metabolism, as well as implying a role in several other cellular processes.
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| Overall design |
For each sample analyzed in this study three biological replicates were performed. Three different samples were taken from a strain expressing the WalR-SPA protein as well as from wild-type (168) without a tagged WalR. Samples were taken from exponentially growing cells in low phosphate medium (LPDM) as well as from phosphate-limited cells (T2). Each sample compares ChIP DNA vs. Total DNA from the same cells.
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| Contributor(s) |
Salzberg LI, Hokamp K, Devine KM |
| Citation(s) |
23199363 |
| Submission date |
Jan 26, 2015 |
| Last update date |
Jan 26, 2015 |
| Contact name |
Karsten Hokamp |
| E-mail(s) |
kahokamp@tcd.ie
|
| Phone |
+35318962719
|
| Organization name |
Trinity College Dublin
|
| Department |
Smurfit Institute of Genetics
|
| Street address |
College Green
|
| City |
Dublin |
| ZIP/Postal code |
2 |
| Country |
Ireland |
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| Platforms (1) |
| GPL13168 |
BaSysBio Bacillus subtilis T2 385K array [090325_CBS_DTU_Bsub_T2] |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA273595 |
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