GEO help: Mouse over screen elements for information.
Status
Public on Mar 03, 2011
Title
[mjay] Custom Affymetrix Mouse Exon Junction Array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Mus musculus Manufacturer
Affymetrix
Manufacture protocol
see website
Submission date
Feb 16, 2011
Last update date
Nov 09, 2011
Contact name
Gene Yeo
E-mail(s)
geneyeo@ucsd.edu Organization name
UCSD
Street address
2880 Torrey Pines Scenic Dr. Room 3805/Yeo Lab
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Samples (129)
GSM676974 , GSM676975 , GSM676976 , GSM676977 , GSM676978 , GSM676979
GSM702351 ,
GSM702352 ,
GSM702353 ,
GSM702354 ,
GSM702355 ,
GSM702356 ,
GSM795285 ,
GSM795286 ,
GSM795287 ,
GSM795288 ,
GSM795289 ,
GSM795290 ,
GSM795291 ,
GSM795292 ,
GSM795293 ,
GSM795294 ,
GSM795295 ,
GSM795296 ,
GSM795297 ,
GSM795298 ,
GSM795299 ,
GSM795300 ,
GSM795301 ,
GSM795302 ,
GSM795303 ,
GSM795304 ,
GSM795305 ,
GSM795306 ,
GSM795307 ,
GSM795308 ,
GSM929766 ,
GSM929767 ,
GSM929768 ,
GSM929769 ,
GSM929770 ,
GSM929771 ,
GSM980383 ,
GSM980384 ,
GSM980399 ,
GSM980400 ,
GSM980403 ,
GSM980408 ,
GSM998840 ,
GSM998841 ,
GSM998842 ,
GSM998843 ,
GSM998844 ,
GSM998845 ,
GSM998846 ,
GSM998847 ,
GSM998848 ,
GSM998849 ,
GSM998850 ,
GSM1005576 ,
GSM1005577 ,
GSM1005578 ,
GSM1005579 ,
GSM1005580 ,
GSM1005581 ,
GSM1005582 ,
GSM1005583 ,
GSM1005584 ,
GSM1005602 ,
GSM1005603 ,
GSM1005604 ,
GSM1005605 ,
GSM1005606 ,
GSM1005607 ,
GSM1005608 ,
GSM1005609 ,
GSM1005610 ,
GSM1005611 ,
GSM1005612 ,
GSM1005613 ,
GSM1087237 ,
GSM1087238 ,
GSM1087239 ,
GSM1087240 ,
GSM1087241 ,
GSM1087242 ,
GSM1087243 ,
GSM1087244 ,
GSM1087245 ,
GSM1087246 ,
GSM1087247 ,
GSM1087248 ,
GSM1087249 ,
GSM1087250 ,
GSM1087251 ,
GSM1087252 ,
GSM1251764 ,
GSM1251765 ,
GSM1251766 ,
GSM1251767 ,
GSM1251768 ,
GSM1251769 ,
GSM1629336 ,
GSM1629337 ,
GSM1629338 ,
GSM1629339 ,
GSM1629340 ,
GSM1629341 ,
GSM1848836 ,
GSM1848837 ,
GSM1848838 ,
GSM1848839 ,
GSM1848840 ,
GSM1848841 ,
GSM2056768 ,
GSM2056769 ,
GSM2056770 ,
GSM2056771 ,
GSM2056772 ,
GSM2056773 ,
GSM2056774 ,
GSM2056775 ,
GSM2056776 ,
GSM2298436 ,
GSM2298437 ,
GSM2298438 ,
GSM2298439 ,
GSM2298440 ,
GSM2298441 Series (21)
GSE27371 Disrupted processing of long pre-mRNAs and widespread RNA missplicing are components of neuronal vulnerability from loss of nuclear TDP-43 (Affymetrix)
GSE27394 Disrupted processing of long pre-mRNAs and widespread RNA missplicing are components of neuronal vulnerability from loss of nuclear TDP-43
GSE28421 The splicing regulator Rbfox1 (A2BP1) controls neuronal excitation in the mammalian brain
GSE32073 Rbfox1 downregulation and altered Calpain 3 splicing by FRG1 in a mouse model of facioscapulohumeral muscular dystrophy (FSHD).
GSE37908 Muscleblind-Like 2 Mediated Alternative Splicing in the Developing Brain
GSE39856 BORG analysis
GSE40649 Divergent roles of ALS-linked proteins FUS/TLS and TDP-43 intersect in processing long pre-mRNAs (microarray)
GSE40653 Divergent roles of ALS-linked proteins FUS/TLS and TDP-43 intersect in processing long pre-mRNAs
GSE40956 Quaking is a global regulator of muscle-specific alternative splicing in vertebrates [differentiation data]
GSE40961 Quaking is a global regulator of muscle-specific alternative splicing in vertebrates [siRNA data]
GSE40962 Quaking is a global regulator of muscle-specific alternative splicing in vertebrates
GSE44583 Genome-wide Analysis Reveals SR Protein Cooperation and Competition in Regulated Splicing
GSE51738 Microarray analysis of alternative splicing in PTBP2 knockout mouse brain
GSE51740 Alternative splicing in PTBP2 knockout mouse brain
GSE66696 Whole brain RNA from congenic littermates does not support a general effect of Nxf1 CAST alleles on alternative pre-mRNA processing
GSE71917 Cytoplasmic Rbfox1 regulates the neuronal expression of synaptic and autism-related genes
GSE71974 Gene expression profiling of neurons with Rbfox1 and Rbfox3 knockdown
GSE77699 Distinct and shared functions of ALS-associated TDP-43, FUS, and TAF15 revealed by comprehensive multi-system integrative analyses [array]
GSE77707 Distinct and shared functions of ALS-associated TDP-43, FUS, and TAF15 revealed by comprehensive multi-system integrative analyses
GSE86224 HNRNPA2B1 regulates alternative RNA processing in the nervous system and accumulates in granules in ALS IPSC-derived motor neurons [hnRNPA2B1_Arrays_mouse_SC]
GSE86464 HNRNPA2B1 regulates alternative RNA processing in the nervous system and accumulates in granules in ALS IPSC-derived motor neurons
Relations Alternative to
GPL14865 (Alternative [MJAY_r2.pgf])
Data table header descriptions ID region_id Probeset_Target_Sequence Transcript_Cluster Chromosome TC_Genomic_Start TC_Genomic_End Strand Gene_symbol Gene_Description SPOT_ID
Data table ID region_id Probeset_Target_Sequence Transcript_Cluster Chromosome TC_Genomic_Start TC_Genomic_End Strand Gene_symbol Gene_Description SPOT_ID 462617
PSR010000001
gtgcttgcttcggcaacacatacactaaattttgaacgatacagagaagattagcatgggccctgcacaaggatgacacacaaaatataaatattgagtaacaaaaatat
TC0100001
chr1
3098898
3099007
+
ENSMUSG00000064842
U6 spliceosomal RNA
TC0100001
270860
JUC0100000001
tgctgttggtgcagccgctgggttgcggccca
TC0100003
chr1
4766723
4767791
+
ENSMUSG00000050025
TC0100003
504425
PSR010000003
atggcggtggtggctggtctggtgcggggacccttgcggcaggtttccaggcgttttcaccgctcggcgcccgcagcggtgcagttgacagttcgtgaagctaataatcaaggtacggatgaagaactagaaagagatgaaaaagtttttctgcttggggaagaagttgcccagtatgacggtgcatacaaggttagcagaggcctgtggaagaaatacggtgacaagaggatcatcgacacccccatctcagagatgggctttgctggaattgctgttggtgcagcc
TC0100003
chr1
4766723
4767791
+
ENSMUSG00000050025
TC0100003
660132
PSR010000003
atggcggtggtggctggtctggtgcggggacccttgcggcaggtttccaggcgttttcaccgctcggcgcccgcagcggtgcagttgacagttcgtgaagctaataatcaaggtacggatgaagaactagaaagagatgaaaaagtttttctgcttggggaagaagttgcccagtatgacggtgcatacaaggttagcagaggcctgtggaagaaatacggtgacaagaggatcatcgacacccccatctcagagatgggctttgctggaattgctgttggtgcagcc
TC0100003
chr1
4766723
4767791
+
ENSMUSG00000050025
TC0100003
597029
PSR010000004
gctgggttgcggcccatctgtgaatttatgaccttcaatttctctatgcaagctattgaccaggttataaactcagctgccaagacttactatatgtccgctggccttcaccctgtgcccatagtattcagggggcccaatggcgcctcagcaggtgtagctgctcagcactcgcaatgctttgctgcatggtatgggcactgcccaggtttaaaagtggtcagcccctggaattccgaggatgcaaaaggacttattaaatcggctattcgtgataatagcccagtggtaatgctagaaaatgaactgatgtatggagttgcatttgaagttcctgcagaagctcagtcaaaagatttcctgattcctattggaaaagccaaaattgaaaggcaagggacccacatcactgtagttgcccattcaagcccagtgggccactgcctagaagctgcagctgtattgtctaaagagggaattgaatgtgaggtaataaatctgcgtaccatcagaccaatgcacattgaagccatagaagccagtgtgatgaagacataccatctcgtgactgtggaaggaggctggccacaatttggagtaggagctgagatttgtgccagaattatggaaggccctgcattcaacttccttgatgcccctgccgttcctgtcactggtgctgatgtccctatgccttacgcaaaggtcctagaagacaactccgtacctcaggtcaaagacatcatatttgcagtaaggaagactttgaacatctaa
TC0100003
chr1
4766723
4767791
+
ENSMUSG00000050025
TC0100003
608958
JUC0100000003
acatctgtccacatgcccctgtgatgccagtc
TC0100004
chr1
4803454
4914291
+
"31543132,ENSMUSG00000025903"
Lysophospholipase 1|Lysophospholipase 1 (Lypla1)
TC0100004
385940
JUC0100000010
ggcttcgttttcacaggggccgatcaacagtg
TC0100004
chr1
4803454
4914291
+
"31543132,ENSMUSG00000025903"
Lysophospholipase 1|Lysophospholipase 1 (Lypla1)
TC0100004
180511
JUC0100000025
gattgggagatacagggcatggatgggcagaa
TC0100004
chr1
4803454
4914291
+
"31543132,ENSMUSG00000025903"
Lysophospholipase 1|Lysophospholipase 1 (Lypla1)
TC0100004
143356
JUC0100000033
gggaggattttctcaggggccgatcaacagtg
TC0100004
chr1
4803454
4914291
+
"31543132,ENSMUSG00000025903"
Lysophospholipase 1|Lysophospholipase 1 (Lypla1)
TC0100004
373072
JUC0100000037
acatctgtccacatgcgtttgatatcgttgga
TC0100004
chr1
4803454
4914291
+
"31543132,ENSMUSG00000025903"
Lysophospholipase 1|Lysophospholipase 1 (Lypla1)
TC0100004
122868
JUC0100000041
gagaaaccctgtctcgaacatcaacaaaacaa
TC0100004
chr1
4803454
4914291
+
"31543132,ENSMUSG00000025903"
Lysophospholipase 1|Lysophospholipase 1 (Lypla1)
TC0100004
131516
JUC0100000051
gggaggattttctcagggaggcgccttgtctt
TC0100004
chr1
4803454
4914291
+
"31543132,ENSMUSG00000025903"
Lysophospholipase 1|Lysophospholipase 1 (Lypla1)
TC0100004
5704
JUC0100000054
caggcagcagaaaccgtaaaagccttgataga
TC0100004
chr1
4803454
4914291
+
"31543132,ENSMUSG00000025903"
Lysophospholipase 1|Lysophospholipase 1 (Lypla1)
TC0100004
240916
JUC0100000055
gaaggccaccgccgcggcatggatgggcagaa
TC0100004
chr1
4803454
4914291
+
"31543132,ENSMUSG00000025903"
Lysophospholipase 1|Lysophospholipase 1 (Lypla1)
TC0100004
175961
JUC0100000057
gaaggccaccgccgcggttattttccttcacg
TC0100004
chr1
4803454
4914291
+
"31543132,ENSMUSG00000025903"
Lysophospholipase 1|Lysophospholipase 1 (Lypla1)
TC0100004
179936
JUC0100000058
tggctatgccttcttggtttgatatcgttgga
TC0100004
chr1
4803454
4914291
+
"31543132,ENSMUSG00000025903"
Lysophospholipase 1|Lysophospholipase 1 (Lypla1)
TC0100004
430195
JUC0100000068
cagctcatgtcagcaggaaatgatggatgtca
TC0100004
chr1
4803454
4914291
+
"31543132,ENSMUSG00000025903"
Lysophospholipase 1|Lysophospholipase 1 (Lypla1)
TC0100004
469759
PSR010000005
tgtccgccagccggtggatgtgcggcaacaacatgtccgctccgatgcccgccgttgtgccggccgcccggaaggccaccgccgcg
TC0100004
chr1
4803454
4914291
+
"31543132,ENSMUSG00000025903"
Lysophospholipase 1|Lysophospholipase 1 (Lypla1)
TC0100004
337375
PSR010000006
gttattttccttcacggattgggagatacagg
TC0100004
chr1
4803454
4914291
+
"31543132,ENSMUSG00000025903"
Lysophospholipase 1|Lysophospholipase 1 (Lypla1)
TC0100004
206463
PSR010000007
gcatggatgggcagaagcctttgcaggtatcaaaagtccccacatcaaatacatctgtccacatgc
TC0100004
chr1
4803454
4914291
+
"31543132,ENSMUSG00000025903"
Lysophospholipase 1|Lysophospholipase 1 (Lypla1)
TC0100004
532383 163571 Kbytes .Supplementary file Size Download File type/resource GPL13185_mjay.clf.gz
29.5 Mb
(ftp) (http) CLF
GPL13185_mjay.pgf.gz
110.8 Mb
(ftp) (http) PGF
Less...
More...