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Platform GPL13213 Query DataSets for GPL13213
Status Public on Feb 22, 2011
Title Bacteroides fragilis YCH46 gene expression 4x72K array [2007-08-21_GFC235_Bfla_60mer_4plex]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Bacteroides fragilis YCH46
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description Array is included 4,527 target genes on the glass slide by fixing at least 8 unique probes consisting of 60-mer synthetic oligonucleotides for each gene. Each probe is replicated 2 times.
DESIGN_NAME: 2007-08-21_GFC235_Bfla_60mer_4plex
DESIGN_ID: 6296
 
Submission date Feb 22, 2011
Last update date Feb 22, 2011
Contact name Haruyuki Nakayama-Imaohji
E-mail(s) nakayama@basic.med.tokushima-u.ac.jp
Organization name Tokushima University
Street address 3-18-15 kuramoto-cho
City tokushima
ZIP/Postal code 770-8503
Country Japan
 
Samples (8) GSM678272, GSM678273, GSM678274, GSM678275, GSM1692522, GSM1692523 
Series (2)
GSE27439 Identification of the regulatory circuit of PhoB in Bacteroides fragilis strain YCH46
GSE69071 Identification of the genetic loci associating with the OMV formation by means of transcriptome analysis on the isogenic BF2766 mutants in B. fragilis strain YCH46

Data table header descriptions
ID
ORF locus tag
GENE_ID Entrez GeneID number for the ORF to which the indicated probe is directed.
GENOME_ACC GenBank Accession number

Data table
ID ORF GENE_ID GENOME_ACC
TI295405P00000001 BFp0001 3021441 NC_006297
TI295405P00000002 BFp0002 3021410 NC_006297
TI295405P00000003 BFp0003 3021442 NC_006297
TI295405P00000004 BFp0004 3021443 NC_006297
TI295405P00000005 BFp0005 3021436 NC_006297
TI295405P00000006 BFp0006 3021407 NC_006297
TI295405P00000007 BFp0007 3021423 NC_006297
TI295405P00000008 BFp0008 3021408 NC_006297
TI295405P00000009 BFp0009 3021433 NC_006297
TI295405P00000010 BFp0010 3021409 NC_006297
TI295405P00000011 BFp0011 3021437 NC_006297
TI295405P00000012 BFp0012 3021418 NC_006297
TI295405P00000013 BFp0013 3021419 NC_006297
TI295405P00000014 BFp0014 3021417 NC_006297
TI295405P00000015 BFp0015 3021420 NC_006297
TI295405P00000016 BFp0016 3021425 NC_006297
TI295405P00000017 BFp0017 3021421 NC_006297
TI295405P00000018 BFp0018 3021428 NC_006297
TI295405P00000019 BFp0019 3021424 NC_006297
TI295405P00000020 BFp0020 3021429 NC_006297

Total number of rows: 4527

Table truncated, full table size 190 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL13213_2007-08-21_GFC235_Bfla_60mer_4plex.ndf.gz 4.2 Mb (ftp)(http) NDF
GPL13213_2007-08-21_GFC235_Bfla_60mer_4plex.ngd.gz 213.6 Kb (ftp)(http) NGD

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