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Platform GPL13398 Query DataSets for GPL13398
Status Public on Apr 12, 2011
Title Agilent chicken CGH array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Gallus gallus
Manufacturer Agilent
Manufacture protocol See the manufacturer's website (www.agilent.com).
 
Description Agilent design ID 031112.
Platform is based on chicken genome build WUGSC 2.1/galGal3.
 
Submission date Apr 11, 2011
Last update date Apr 12, 2011
Contact name Yanqiang Wang
Organization name The Ohio State University
Street address 12th w street
City Columbus
State/province Ohio
ZIP/Postal code 43210
Country USA
 
Samples (28) GSM706658, GSM706659, GSM706660, GSM706661, GSM706662, GSM706663 
Series (2)
GSE28526 Dehong chicken blood samples: Control vs. 6 chicken blood samples belonging to 3 different breeds
GSE36504 Dehong chicken blood samples vs. 22 different chicken blood samples belonging to 11 breeds

Data table header descriptions
ID Agilent Feature Number
Row Row
Col Column
ControlType 0 (experimental), 1 (positive control), -1 (negative control)
ProbeName Agilent Probe Name
SystematicName Systematic name
Chromosome Chromosome
RANGE_GB RefSeq accession.version of chromosome (WUGSC 2.1/galGal3)
RANGE_START Start coordinate of oligonucleotide relative to RANGE_GB
RANGE_END End coordinate of oligonucleotide relative to RANGE_GB
SPOT_ID

Data table
ID Row Col ControlType ProbeName SystematicName Chromosome RANGE_GB RANGE_START RANGE_END SPOT_ID
1 1 1 1 GgaCGHBrightCorner GgaCGHBrightCorner --GgaCGHBrightCorner
2 1 2 1 DarkCorner DarkCorner --DarkCorner
3 1 3 1 DarkCorner DarkCorner --DarkCorner
4 1 4 0 A_94_P10137058 chr1:34640650-34640709 chr1 NC_006088.2 34640650 34640709
5 1 5 0 A_94_P13456673 chr15:4327969-4328028 chr15 NC_006102.2 4327969 4328028
6 1 6 0 A_94_P14045551 chrZ:58252580-58252639 chrZ NC_006127.2 58252580 58252639
7 1 7 0 A_94_P11488730 chr3:25516644-25516703 chr3 NC_006090.2 25516644 25516703
8 1 8 0 A_94_P13503433 chr17:2738820-2738879 chr17 NC_006104.2 2738820 2738879
9 1 9 0 A_94_P12651980 chr7:3185044-3185103 chr7 NC_006094.2 3185044 3185103
10 1 10 0 A_94_P10004999 chr1:1419213-1419272 chr1 NC_006088.2 1419213 1419272
11 1 11 0 A_94_P11068992 chr2:74146076-74146132 chr2 NC_006089.2 74146076 74146132
12 1 12 0 A_94_P13722685 chr22:1647672-1647731 chr22 NC_006109.2 1647672 1647731
13 1 13 0 A_94_P10736289 chr1:190243282-190243341 chr1 NC_006088.2 190243282 190243341
14 1 14 0 A_94_P11826296 chr3:108180871-108180929 chr3 NC_006090.2 108180871 108180929
15 1 15 0 A_94_P13346703 chr13:13410887-13410940 chr13 NC_006100.2 13410887 13410940
16 1 16 0 A_94_P11695648 chr3:75175251-75175310 chr3 NC_006090.2 75175251 75175310
17 1 17 0 A_94_P12863326 chr8:17414001-17414060 chr8 NC_006095.2 17414001 17414060
18 1 18 0 A_94_P12666521 chr7:6632753-6632803 chr7 NC_006094.2 6632753 6632803
19 1 19 0 A_94_P11726894 chr3:82890560-82890619 chr3 NC_006090.2 82890560 82890619
20 1 20 0 A_94_P13620578 chr19:8336434-8336493 chr19 NC_006106.2 8336434 8336493

Total number of rows: 420288

Table truncated, full table size 36802 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL13398_SequenceList.txt.gz 9.8 Mb (ftp)(http) TXT

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