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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 16, 2012 |
| Title |
NimbleGen Custom Zebrafish aCGH Array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Danio rerio |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
Please visit NimbleGen website
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| Contributor(s) |
Liew W, Bartfai R, Sreenivasan R, Lim Z, Orban L |
| Submission date |
May 06, 2011 |
| Last update date |
May 10, 2011 |
| Contact name |
Woei Chang Liew |
| E-mail(s) |
wcliew@tll.org.sg
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| Organization name |
Temasek Life Sciences Laboratory
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| Lab |
Reproductive Genomics
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| Street address |
1 Research Link, NUS
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| City |
Singapore |
| ZIP/Postal code |
117604 |
| Country |
Singapore |
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| Samples (24)
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GSM847531, GSM847532, GSM847533, GSM847534, GSM847535, GSM847536
GSM847537, GSM847538, GSM847539, GSM847540, GSM847541, GSM847542, GSM847543, GSM847544, GSM847545, GSM847546, GSM847547, GSM847548, GSM847549, GSM847550, GSM847551, GSM847552, GSM847553, GSM847554
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| Series (5)
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| GSE34337 |
Toh family 2 |
| GSE34338 |
Array comparative genomic hybridization to identify genomic differences between male and female zebrafish. |
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| Data table header descriptions |
| ID |
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| CHROMOSOME |
Chromsome |
| POSITION |
Position on chromosome (Zv8) |
| LENGTH |
Probe length |
| SEQUENCE |
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| Data table |
| ID |
CHROMOSOME |
POSITION |
LENGTH |
SEQUENCE |
| CHR01FS000000201 |
chr1 |
30072 |
50 |
CTGCGCCACCGTGCCCACTGTAATGTGCATCTGTGTTGTGTAACTGAAGT |
| CHR01FS000010206 |
chr1 |
744193 |
50 |
AAATCAATAATAGCTTTCAACACCGCTCACTGTCCACTGAGGCGAGCGGA |
| CHR01FS000023601 |
chr1 |
37861801 |
54 |
ACTTTACTTTAGAGTCAAGCAGAGTGAGTCTCTTGCTTAGAGTCAGAGTCTCTT |
| CHR01FS000033646 |
chr1 |
756510 |
50 |
TCAGATCTGCCAAGTGTAATCTGACTATGGCCGTCATGGCACGTAAGAAT |
| CHR01FS000043669 |
chr1 |
768681 |
50 |
TGTAATGTGCGGTGTTCCTGCAGGTGGAACCCTCGCTCGGAGCACCTGCA |
| CHR01FS000053706 |
chr1 |
779002 |
50 |
TCAGGGTGTACCGATCACCGGCGGTCCGTTACTCGGCTAGCGCTGGTCAT |
| CHR01FS000073920 |
chr1 |
782009 |
50 |
TCAGCTGCCATATGCAGAGCCGTGCGGCCGCTCTTACAGTCCTGAGAACA |
| CHR01FS000083956 |
chr1 |
792043 |
58 |
CTGAATCCTCACATTCTATCTTCATCTTCTCCATCAGACGCTGCTATAGTTCATCAAA |
| CHR01FS000094143 |
chr1 |
802540 |
55 |
CTCCTAGAACATTTTACTTTAGAACCTCTCAGTGAAAGTAACCACACTTCACTCT |
| CHR01FS000104201 |
chr5 |
23262166 |
60 |
GTTAACAATAGCAACTCTAATCTTATTTCTCCATGTATCTAGGTGTGTCCAAGTATGTTG |
| CHR01FS000114444 |
chr5 |
23299825 |
50 |
TGGGTGTTTCAAGCAAACCTAGTTGGACGTTGGTTAGCTTGTTCAGATGT |
| CHR01FS000124500 |
chr5 |
23311657 |
50 |
CTCCCTCCGGTGGCATCAAGAAACACGCTTAGCCAGTCACATAGTCTATT |
| CHR01FS000134523 |
chr1 |
2161648 |
50 |
GATCATAGCGCGATTGCTGGTTTCACACATGAAAAACGAACCACGCTAAC |
| CHR01FS000144598 |
chr1 |
2151735 |
50 |
GTGCACTACACAGGACAATCATGCACTTACCAATTTGACCATAGCTCACA |
| CHR01FS000155423 |
chr1 |
2141408 |
55 |
TAATAATACTGACCTCTTTATAAATATTATATTCTGTATAAATATTAAAATTAAA |
| CHR01FS000165496 |
chr1 |
2131769 |
58 |
AAATAAATTTATACACACATTCCTGCAAATAAAGCAATCTATAGTAAATACGCAAATA |
| CHR01FS000175782 |
chr1 |
2121603 |
50 |
AACGGCAACTGACACAGCCGAGGCTTTTACCAGCGTATTTCTTGCTGTGA |
| CHR01FS000185813 |
chr1 |
2111568 |
54 |
AAACCTAAAGCCTATACCTATTAATGGCAACGGTAGTCAAAGTGATTGGTTCAT |
| CHR01FS000195901 |
chr1 |
2101610 |
51 |
CTCTCTAAAAGTGAAATGCAACCAGCTTTGTTCAGGATTCTGAAGTCTGCC |
| CHR01FS000205936 |
chr1 |
2092515 |
50 |
CTGTCCTTCACAATGCCTGAGAGGTTCAGCCCACACTCAGCTCTACAGAT |
Total number of rows: 108851
Table truncated, full table size 9644 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL13500_090313_Zv8_CGH_HX12.ndf.gz |
7.9 Mb |
(ftp)(http) |
NDF |
| GPL13500_090313_Zv8_CGH_HX12.pos.gz |
1.1 Mb |
(ftp)(http) |
POS |
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