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Platform GPL13526 Query DataSets for GPL13526
Status Public on May 13, 2011
Title D. rerio_UFZ_8x15KV4
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Danio rerio
Manufacturer Agilent
Manufacture protocol see at http://www.agilent.com
 
 
Contributor(s) Busch W, Scholz S
Submission date May 12, 2011
Last update date Jun 01, 2011
Contact name Wibke Busch
E-mail(s) wibke.busch@ufz.de
Phone 00493412351515
Organization name UFZ Helmholtz Centre for Environmental Research
Department Bioanalytical Ecotoxicology
Lab Scholz
Street address Permoser Str. 15
City Leipzig
ZIP/Postal code 04318
Country Germany
 
Samples (20) GSM725686, GSM725687, GSM725688, GSM725689, GSM725690, GSM725691 
Series (1)
GSE29357 Zebrafish embryos exposed to the model hedgehog pathway inhibitor cyclopamine, as well as to the potential hedghog pathway disrupters SANT-2 and GANT-61.

Data table header descriptions
ID
COL Column
ROW Row
NAME Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE SPOT_ID
1 96 164 GE_BrightCorner GE_BrightCorner pos --pos
2 96 162 DarkCorner DarkCorner pos --pos
3 96 160 DarkCorner DarkCorner pos --pos
4 96 158 A_15_P107456 A_15_P107456 FALSE NM_205682 NM_205682 zgc:77876 ENSDART00000005373 ref|NM_205682|ens|ENSDART00000005373|gb|BC065463|ug|XM_679864 chr23:1666332-1666273 Danio rerio zgc:77876 (zgc:77876), mRNA [NM_205682] ATGTCTCATATTTGTTTCTTTGGCTTTGGATGTAACGCAATAAACTAAGCCGTTCCATTT
5 96 156 A_15_P183916 A_15_P183916 FALSE LOC402976 ENSDART00000061037 ens|ENSDART00000061037|gb|BC065470|gb|BC124760|gb|BC155583 chr23:37085131-37085072 LOC402976 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q1JPS7] [ENSDART00000061037] GTCAGCCATAATGTCTATGACTTTTATTGCTGATTTTCACTGTGCCTTTAATAAATCCTG
6 96 154 A_15_P172641 A_15_P172641 FALSE NM_001080681 NM_001080681 zgc:158733 ENSDART00000089246 ref|NM_001080681|ens|ENSDART00000089246|gb|BC129413 chr21:10141031-10141090 Danio rerio zgc:158733 (zgc:158733), mRNA [NM_001080681] TTTGTCATTGAAGCTTTTTATCAGTGTGTTATTTTATGTTGTGTGTGTGCACACCATGCA
7 96 152 A_15_P206876 A_15_P206876 FALSE NM_001037376 NM_001037376 zgc:123304 ENSDART00000056376 ref|NM_001037376|ens|ENSDART00000056376|gb|BC108019|tc|TC304340 chr2:40148616-40148557 Danio rerio zgc:123304 (zgc:123304), mRNA [NM_001037376] CTACTGAGAAGTATACGGAAGCCTGTTTCTGCCACAGGATTAAAAAATAAATTGAAAAGA
8 96 150 A_15_P146201 A_15_P146201 FALSE NM_001099449 NM_001099449 DKEY-24K20.1 ENSDART00000088011 ref|NM_001099449|ens|ENSDART00000088011|tc|TC329346|tc|TC340544 chr5:19736190-19736050 Danio rerio novel protein similar to vertebrate transmembrane protein 2 (TMEM2) (LOC566851), mRNA [NM_001099449] GATCTGCTAAAACACCAGACCTTCAGAATAAAGTCGCCATTGCTTTTTTCGGGTTCCTCG
9 96 148 A_15_P120350 A_15_P120350 FALSE NM_001001839 NM_001001839 rela ref|NM_001001839|gb|AY163839|tc|TC305154 unmapped Danio rerio v-rel reticuloendotheliosis viral oncogene homolog A (rela), mRNA [NM_001001839] AAGTAACCATATCAAAACATTCCCCATAATGTTCAAAACAACATCAGATTACATCGGAGC
10 96 146 A_15_P200126 A_15_P200126 FALSE NM_001077602 NM_001077602 cyp4v2 ENSDART00000089480 ref|NM_001077602|ens|ENSDART00000089480|ens|ENSDART00000103206|gb|BC125968 chr1:13743133-13743192 Danio rerio cytochrome P450, family 4, subfamily V, polypeptide 2 (cyp4v2), mRNA [NM_001077602] TTTAACATCGTAGCATGTCAAAAGAGGGAAGAACTTCGCCCACTGGGTGAACTGGTATTG
11 96 144 A_15_P116831 A_15_P116831 FALSE NM_001007357 NM_001007357 zgc:103699 ENSDART00000058971 ref|NM_001007357|ens|ENSDART00000058971|gb|BC085589|ug|CN315887 chr12:46166476-46166417 Danio rerio zgc:103699 (zgc:103699), mRNA [NM_001007357] CTGCTCTGAAAACATCCACAAAATCTCTCTGGGCGACAACCAGATTAAAGCTCTGAGCAA
12 96 142 A_15_P199186 A_15_P199186 FALSE LOC570654 ENSDART00000017829 ens|ENSDART00000017829 chr2:37465036-37464684 CCAAATAACAGTACACAGGTCTTACATTTCCACAAAATACAAAGCCACAAATTGTCTGAA
13 96 140 A_15_P111587 A_15_P111587 FALSE NM_200701 NM_200701 wdr21 ref|NM_200701|gb|BC059444|gb|AY423032|ug|XR_029975 chr20:025148930-025148989 Danio rerio WD repeat domain 21 (wdr21), mRNA [NM_200701] AAACATACACCTAATTCTAGCCTCTTGAAATATACCTCCTGAAAGTGCAATTTCATGATG
14 96 138 A_15_P550632 A_15_P550632 FALSE nitr3c ENSDART00000053340 ens|ENSDART00000053340|gb|BC095008|ug|XM_001335008|tc|TC331425 chr7:10892300-10892359 novel immune-type receptor [Source:RefSeq_peptide;Acc:NP_001007203] [ENSDART00000053340] AGATCAGGGCCTGGCTGTGTAGACTTACGATGTGGTCAGATATTGATAAAGTTATTATTG
15 96 136 A_15_P115228 A_15_P115228 FALSE NM_213070 NM_213070 zgc:55877 ref|NM_213070|gb|BC044523|tc|TC330639 chr1:50640525-50640583 Danio rerio zgc:55877 (zgc:55877), mRNA [NM_213070] GATGGTGAAGATCAATGCCTGACAACTGAAGCCACAGATGCAAACTTTGTCTTTGGAGCA
16 96 134 A_15_P179531 A_15_P179531 FALSE NM_001109836 NM_001109836 zgc:173587 ref|NM_001109836|gb|BC152107|tc|TC363677 chr7:68761747-68761688 Danio rerio zgc:173587 (zgc:173587), mRNA [NM_001109836] TCCTGTATATCAAATCACTTCTGATTGTAATGCAATGTGCCCCTTATGAAAAAGCTTCTT
17 96 132 NA NA ignore --ignore
18 96 130 A_15_P167216 A_15_P167216 FALSE LOC570642 ENSDART00000082169 ens|ENSDART00000082169|ug|XM_694147 chr12:44054781-44054722 PREDICTED: Danio rerio hypothetical LOC570642 (LOC570642), mRNA [XM_694147] CAAAAACTTCGAGAGGTGGTCAGTAAAAACACCTGTGACATTCTCAAAGAGTTCGTGCAG
19 96 128 A_15_P100764 A_15_P100764 FALSE LOC565710 ENSDART00000022170 ens|ENSDART00000022170|ug|XM_688980|tc|TC315383 chr10:13804041-13804100 PREDICTED: Danio rerio similar to containing human KIAA0714 protein (LOC565710), mRNA [XM_688980] CATCTTCAGCATAGTGGATAAATTCACCAGCAAGTACGTCAGCGGCATTTTGTCTGCACA
20 96 126 A_15_P103066 A_15_P103066 FALSE NM_198211 NM_198211 ing5a ref|NM_198211|ref|NM_001100049|gb|AY391432|tc|TC307306 chr22:1895082-1895023 Danio rerio inhibitor of growth family, member 5a (ing5a), mRNA [NM_198211] TGTCAAATGTCTTTCAGGCAATTTAGAATATATTATATATGACATATATACATATATTTT

Total number of rows: 15744

Table truncated, full table size 4487 Kbytes.




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