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Status
Public on Mar 01, 2012
Title
Roche Nimblegen G.zeae 135K microarray
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Fusarium graminearum Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Submission date
Jul 11, 2011
Last update date
Mar 01, 2012
Contact name
Won Kyong Cho
E-mail(s)
wonkyong@gmail.com Phone
+82-2-880-4928
Organization name
Seoul National University
Department
Department of Agricultural Biotechnology and Center for Fungal Pathogenesis
Street address
5103-ho, 200-dong, Daehak-dong, Kwanak-gu
City
Seoul
ZIP/Postal code
151-921
Country
South Korea
Samples (12)
GSM757782 , GSM757783 , GSM757784 , GSM757785 , GSM757786 , GSM757787
Series (1)
GSE30545 Genome-wide expression profiling reveals transcriptional reprogramming in Fusarium graminearum by FgV1-DK21 virus infection
Data table header descriptions ID Name of the probe which were used for microarray chip
SPOT_ID Name of gene locus according to Fusarum graminearum genome database (http://www.broadinstitute.org/annotation/genome/fusarium_graminearum/MultiHome.html)
Description Predicted conserved domain in each Fusarium graminearum gene
Data table ID SPOT_ID Description f_gramin_000001
FGSG_00001
NA
f_gramin_000002
FGSG_00002
"pfam03302, VSP, Giardia variant-specific surface protein"
f_gramin_000003
FGSG_00003
NA
f_gramin_000004
FGSG_00004
NA
f_gramin_000005
FGSG_00005
"pfam03302, VSP, Giardia variant-specific surface protein"
f_gramin_000006
FGSG_00006
NA
f_gramin_000007
FGSG_00007
"pfam00067, p450, Cytochrome P450"
f_gramin_000008
FGSG_00009
NA
f_gramin_000009
FGSG_00010
"COG1289, COG1289, Predicted membrane protein"
f_gramin_000010
FGSG_00011
"COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity"
f_gramin_000011
FGSG_00012
"pfam00067, p450, Cytochrome P450"
f_gramin_000012
FGSG_00013
"pfam00083, Sugar_tr, Sugar (and other) transporter"
f_gramin_000013
FGSG_00014
"COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis"
f_gramin_000014
FGSG_00015
"pfam00083, Sugar_tr, Sugar (and other) transporter"
f_gramin_000015
FGSG_00016
"pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH)"
f_gramin_000016
FGSG_00017
"COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases"
f_gramin_000017
FGSG_00018
"pfam00487, FA_desaturase, Fatty acid desaturase"
f_gramin_000018
FGSG_00019
"cd00876, Ras, Ras family"
f_gramin_000019
FGSG_00020
"pfam04484, DUF566, Family of unknown function (DUF566)"
f_gramin_000020
FGSG_00021
"pfam07380, Pneumo_M2, Pneumovirus M2 protein"
13388 1048 Kbytes .Supplementary file Size Download File type/resource GPL13843_Fusarium_135k.ndf.gz
6.3 Mb
(ftp) (http) NDF
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