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Platform GPL13843 Query DataSets for GPL13843
Status Public on Mar 01, 2012
Title Roche Nimblegen G.zeae 135K microarray
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Fusarium graminearum
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at
Submission date Jul 11, 2011
Last update date Mar 01, 2012
Contact name Won Kyong Cho
Phone +82-2-880-4928
Organization name Seoul National University
Department Department of Agricultural Biotechnology and Center for Fungal Pathogenesis
Street address 5103-ho, 200-dong, Daehak-dong, Kwanak-gu
City Seoul
ZIP/Postal code 151-921
Country South Korea
Samples (12) GSM757782, GSM757783, GSM757784, GSM757785, GSM757786, GSM757787 
Series (1)
GSE30545 Genome-wide expression profiling reveals transcriptional reprogramming in Fusarium graminearum by FgV1-DK21 virus infection

Data table header descriptions
ID Name of the probe which were used for microarray chip
SPOT_ID Name of gene locus according to Fusarum graminearum genome database (
Description Predicted conserved domain in each Fusarium graminearum gene

Data table
ID SPOT_ID Description
f_gramin_000001 FGSG_00001 NA
f_gramin_000002 FGSG_00002 "pfam03302, VSP, Giardia variant-specific surface protein"
f_gramin_000003 FGSG_00003 NA
f_gramin_000004 FGSG_00004 NA
f_gramin_000005 FGSG_00005 "pfam03302, VSP, Giardia variant-specific surface protein"
f_gramin_000006 FGSG_00006 NA
f_gramin_000007 FGSG_00007 "pfam00067, p450, Cytochrome P450"
f_gramin_000008 FGSG_00009 NA
f_gramin_000009 FGSG_00010 "COG1289, COG1289, Predicted membrane protein"
f_gramin_000010 FGSG_00011 "COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity"
f_gramin_000011 FGSG_00012 "pfam00067, p450, Cytochrome P450"
f_gramin_000012 FGSG_00013 "pfam00083, Sugar_tr, Sugar (and other) transporter"
f_gramin_000013 FGSG_00014 "COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis"
f_gramin_000014 FGSG_00015 "pfam00083, Sugar_tr, Sugar (and other) transporter"
f_gramin_000015 FGSG_00016 "pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH)"
f_gramin_000016 FGSG_00017 "COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases"
f_gramin_000017 FGSG_00018 "pfam00487, FA_desaturase, Fatty acid desaturase"
f_gramin_000018 FGSG_00019 "cd00876, Ras, Ras family"
f_gramin_000019 FGSG_00020 "pfam04484, DUF566, Family of unknown function (DUF566)"
f_gramin_000020 FGSG_00021 "pfam07380, Pneumo_M2, Pneumovirus M2 protein"

Total number of rows: 13388

Table truncated, full table size 1048 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL13843_Fusarium_135k.ndf.gz 6.3 Mb (ftp)(http) NDF

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