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Platform GPL13969 Query DataSets for GPL13969
Status Public on Jul 22, 2015
Title 29K Cotton Genome Array
Technology type spotted DNA/cDNA
Distribution custom-commercial
Organism Gossypium hirsutum
Manufacturer CapitalBio Corporation,National Engineering Research Center for Beijing Biochip Technology,18 Life Science Parkway, Beijing 102206, China
Manufacture protocol 1.29K Cotton Genome cDNA microarray constructed by Peking University and CapitalBio Corp. The Peking University construct cDNA library and provide PCR products (Shi et al., 2006). And PCR products were printed in SmartArrayTM (CapitalBio Corp., Beijing, China).
2. Hex was used as positive control.
3. 50% DMSO was used as negative control.
4.Several housekeeping genes were used as hybridization positive control.
5.Eight sequence derived from intergenic regions of the yeast genome showing no significant homology with any existing cotton sequences in GenBank were used as external controls.
 
 
Submission date Jul 26, 2011
Last update date Jul 22, 2015
Contact name Lu You Yuan
E-mail(s) youluyuan@hotmail.com
Phone 86-372-2525350
Organization name Cotton Research Institute, Chinese Academy of Agricultyral Science
Department Molecular Breeding
Lab Cotton Lab
Street address Huanghe Road 38#
City Anyang
State/province Henan
ZIP/Postal code 455000
Country China
 
Samples (15) GSM767231, GSM767232, GSM767233, GSM767234, GSM767235, GSM767236 
Series (1)
GSE30944 cDNA array expression in cotton fiber secondary cell wall development from two germplasm lines that differ in fiber strength

Data table header descriptions
ID
GB_ACC GenBank accession number of sequence used to design cDNA array probe
Description Gene description
SPOT_ID Gene symbols

Data table
ID GB_ACC Description SPOT_ID
CM020A01 NC --NC
CM034G09 NC --NC
CM048F4 NC --NC
CM061D06 NC --NC
CM115A05 NC --NC
HEX spot and immobilization positive control --spot and immobilization positive control
50%DMSO hybridization negative control,spot solution --hybridization negative control,spot solution
Y1 Yeast intergenic sequence 1, spike RNA --Yeast intergenic sequence 1, spike RNA
Y2 Yeast intergenic sequence 2, spike RNA --Yeast intergenic sequence 2, spike RNA
Y3 Yeast intergenic sequence 3, spike RNA --Yeast intergenic sequence 3, spike RNA
Y4 Yeast intergenic sequence 4, spike RNA --Yeast intergenic sequence 4, spike RNA
Y5 Yeast intergenic sequence 5, spike RNA --Yeast intergenic sequence 5, spike RNA
Y6 Yeast intergenic sequence 6, spike RNA --Yeast intergenic sequence 6, spike RNA
Y7 Yeast intergenic sequence 7, spike RNA --Yeast intergenic sequence 7, spike RNA
Y8 Yeast intergenic sequence 8, spike RNA --Yeast intergenic sequence 8, spike RNA
384P01_A_01 ES834740 2OG-Fe(II) oxygenase [Medicago truncatula]
384P01_A_02 ES801680 putative nicotiana eukaryotic translation initiation factor 4A [Oryza sativa (japonica cultivar-group)]
384P01_A_03 ES834761 peptidase [Arabidopsis thaliana]
384P01_A_04 EY196057
384P01_A_05 ES834762 unknown [Arabidopsis thaliana]

Total number of rows: 28196

Table truncated, full table size 2524 Kbytes.




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Supplementary data files not provided
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