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Platform GPL13992 Query DataSets for GPL13992
Status Public on Mar 07, 2012
Title Agilent-023723 UCSF Multi-species custom 8x15K miRNA array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Caenorhabditis elegans; Drosophila melanogaster; Danio rerio; Gallus gallus; Homo sapiens; Mus musculus; Rattus norvegicus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description miRNA microarray probe design, v3.4 (4/17/2009).
miRNA probes were designed using Sanger miRBase, version 13 (from ftp://ftp.sanger.ac.uk/pub/mirbase/sequences/CURRENT/).
Custom array contains multiple replicates for each miRNA probe for 7 species: human, mouse, rat, chicken, zebrafish, C.elegans and Drospohila).
Total unique probe sequences:
2270(miR)+14(siRNA)+24(snRNA)+16(snoRNA)+3(tRNA)+30(spike-in)+30(mRNA)+192 = 2579
 
Submission date Jul 29, 2011
Last update date Mar 07, 2012
Contact name Andrea J Barczak
Organization name UCSF Sandler Center Functional Genomics Core Facility
Street address 1550 4th St Rock Hall 545
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Samples (13) GSM768903, GSM915804, GSM915805, GSM915806, GSM915807, GSM915808 
Series (3)
GSE31030 Targeting microRNAs for asthma treatment
GSE37308 In Vivo Organ Regeneration via Stroma-Dependent Adult Lineage Reprogramming (miRNA)
GSE37309 In Vivo Organ Regeneration via Stroma-Dependent Adult Lineage Reprogramming

Data table header descriptions
ID ProbeID
Symbol
SEQUENCE
Accession
miRNA_LIST miRBase miRNA Accession(s)
Orig.Sequence
Category
Species
ShortSymbol
Symbol.hsa
Symbol.mmu
Symbol.dre
Symbol.gga
Symbol.rno
Symbol.dme
Symbol.cel
MatureAccession

Data table
ID Symbol SEQUENCE Accession miRNA_LIST Orig.Sequence Category Species ShortSymbol Symbol.hsa Symbol.mmu Symbol.dre Symbol.gga Symbol.rno Symbol.dme Symbol.cel MatureAccession
UCSF034_000001 CD8* GGCTACAACTACTACATGACTTTTTTTTTT siRNA CD8*
UCSF034_000002 CD8 GGTCATGTAGTAGTTGTAGCTTTTTTTTTT siRNA CD8
UCSF034_000003 EGFP-Haute* GGATGCCACCTACGGCAAGCTTTTTTTTTTT siRNA EGFP-Haute*
UCSF034_000004 EGFP-Haute GAGCTTGCCGTAGGTGGCATCTTTTTTTTTT siRNA EGFP-Haute
UCSF034_000005 EGFP-Huang* GGAAGCAGCACGACTTCTTCAAGTTTTTTTTTT siRNA EGFP-Huang*
UCSF034_000006 EGFP-Huang GCTTGAAGAAGTCGTGCTGCTTCTTTTTTTTTT siRNA EGFP-Huang
UCSF034_000007 EGFP-Kwak* GGGCGATGCCACCTACGGCAAGTTTTTTTTTT siRNA EGFP-Kwak*
UCSF034_000008 EGFP-Kwak GCTTGCCGTAGGTGGCATCGCCTTTTTTTTTT siRNA EGFP-Kwak
UCSF034_000009 EGFP-Stewart1* GGGCTACGTCCAGGAGCGCACCTTTTTTTTTT siRNA EGFP-Stewart1*
UCSF034_000010 EGFP-Stewart1 GGGTGCGCTCCTGGACGTAGCCTTTTTTTTTT siRNA EGFP-Stewart1
UCSF034_000011 EGFP-Stewart2* GGCAAGCTGACCCTGAAGTTCATTTTTTTTTTT siRNA EGFP-Stewart2*
UCSF034_000012 EGFP-Stewart2 GATGAACTTCAGGGTCAGCTTGCTTTTTTTTTT siRNA EGFP-Stewart2
UCSF034_000013 EGFP-Tran* GCGGCAAGCTGACCCTGAAGTTTTTTTTTT siRNA EGFP-Tran*
UCSF034_000014 EGFP-Tran GCTTCAGGGTCAGCTTGCCGTTTTTTTTTT siRNA EGFP-Tran
UCSF034_000015 U1 CTCCCCTGCCAGGTAAGTATTTTTTTTTTT J00318 snRNA U1
UCSF034_000016 U1 GCCCTGGGAAAACCACCTTCTTTTTTTTTT J00318 snRNA U1
UCSF034_000017 U1 AAATCGCAGGGGTCAGCTTTTTTTTTT J00318 snRNA U1
UCSF034_000018 U1 AGTCCCCCACTACCACAAATTTTTTTTTTTT J00318 snRNA U1
UCSF034_000019 U2 AGCCAAAAGGCCGAGAAGCGATTTTTTTTTT X59360 snRNA U2
UCSF034_000020 U2 CTACACTTGATCTTTTTTTTTTTT X59360 snRNA U2

Total number of rows: 2579

Table truncated, full table size 401 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL13992_miRNA-all-v3.4-8x15k-annotation.txt.gz 153.6 Kb (ftp)(http) TXT

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