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Status
Public on Mar 07, 2012
Title
Agilent-023723 UCSF Multi-species custom 8x15K miRNA array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organisms
Caenorhabditis elegans ; Drosophila melanogaster ; Danio rerio ; Gallus gallus ; Homo sapiens ; Mus musculus ; Rattus norvegicus
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
miRNA microarray probe design, v3.4 (4/17/2009). miRNA probes were designed using Sanger miRBase, version 13 (from ftp://ftp.sanger.ac.uk/pub/mirbase/sequences/CURRENT/ ). Custom array contains multiple replicates for each miRNA probe for 7 species: human, mouse, rat, chicken, zebrafish, C.elegans and Drospohila). Total unique probe sequences: 2270(miR)+14(siRNA)+24(snRNA)+16(snoRNA)+3(tRNA)+30(spike-in)+30(mRNA)+192 = 2579
Submission date
Jul 29, 2011
Last update date
Mar 07, 2012
Contact name
Andrea J Barczak
Organization name
UCSF Sandler Center Functional Genomics Core Facility
Street address
1550 4th St Rock Hall 545
City
San Francisco
State/province
CA
ZIP/Postal code
94143
Country
USA
Samples (13)
GSM768903 , GSM915804 , GSM915805 , GSM915806 , GSM915807 , GSM915808
Series (3)
GSE31030
Targeting microRNAs for asthma treatment
GSE37308
In Vivo Organ Regeneration via Stroma-Dependent Adult Lineage Reprogramming (miRNA)
GSE37309
In Vivo Organ Regeneration via Stroma-Dependent Adult Lineage Reprogramming
Data table header descriptions
ID
ProbeID
Symbol
SEQUENCE
Accession
miRNA_LIST
miRBase miRNA Accession(s)
Orig.Sequence
Category
Species
ShortSymbol
Symbol.hsa
Symbol.mmu
Symbol.dre
Symbol.gga
Symbol.rno
Symbol.dme
Symbol.cel
MatureAccession
Data table
ID
Symbol
SEQUENCE
Accession
miRNA_LIST
Orig.Sequence
Category
Species
ShortSymbol
Symbol.hsa
Symbol.mmu
Symbol.dre
Symbol.gga
Symbol.rno
Symbol.dme
Symbol.cel
MatureAccession
UCSF034_000001
CD8*
GGCTACAACTACTACATGACTTTTTTTTTT
siRNA
CD8*
UCSF034_000002
CD8
GGTCATGTAGTAGTTGTAGCTTTTTTTTTT
siRNA
CD8
UCSF034_000003
EGFP-Haute*
GGATGCCACCTACGGCAAGCTTTTTTTTTTT
siRNA
EGFP-Haute*
UCSF034_000004
EGFP-Haute
GAGCTTGCCGTAGGTGGCATCTTTTTTTTTT
siRNA
EGFP-Haute
UCSF034_000005
EGFP-Huang*
GGAAGCAGCACGACTTCTTCAAGTTTTTTTTTT
siRNA
EGFP-Huang*
UCSF034_000006
EGFP-Huang
GCTTGAAGAAGTCGTGCTGCTTCTTTTTTTTTT
siRNA
EGFP-Huang
UCSF034_000007
EGFP-Kwak*
GGGCGATGCCACCTACGGCAAGTTTTTTTTTT
siRNA
EGFP-Kwak*
UCSF034_000008
EGFP-Kwak
GCTTGCCGTAGGTGGCATCGCCTTTTTTTTTT
siRNA
EGFP-Kwak
UCSF034_000009
EGFP-Stewart1*
GGGCTACGTCCAGGAGCGCACCTTTTTTTTTT
siRNA
EGFP-Stewart1*
UCSF034_000010
EGFP-Stewart1
GGGTGCGCTCCTGGACGTAGCCTTTTTTTTTT
siRNA
EGFP-Stewart1
UCSF034_000011
EGFP-Stewart2*
GGCAAGCTGACCCTGAAGTTCATTTTTTTTTTT
siRNA
EGFP-Stewart2*
UCSF034_000012
EGFP-Stewart2
GATGAACTTCAGGGTCAGCTTGCTTTTTTTTTT
siRNA
EGFP-Stewart2
UCSF034_000013
EGFP-Tran*
GCGGCAAGCTGACCCTGAAGTTTTTTTTTT
siRNA
EGFP-Tran*
UCSF034_000014
EGFP-Tran
GCTTCAGGGTCAGCTTGCCGTTTTTTTTTT
siRNA
EGFP-Tran
UCSF034_000015
U1
CTCCCCTGCCAGGTAAGTATTTTTTTTTTT
J00318
snRNA
U1
UCSF034_000016
U1
GCCCTGGGAAAACCACCTTCTTTTTTTTTT
J00318
snRNA
U1
UCSF034_000017
U1
AAATCGCAGGGGTCAGCTTTTTTTTTT
J00318
snRNA
U1
UCSF034_000018
U1
AGTCCCCCACTACCACAAATTTTTTTTTTTT
J00318
snRNA
U1
UCSF034_000019
U2
AGCCAAAAGGCCGAGAAGCGATTTTTTTTTT
X59360
snRNA
U2
UCSF034_000020
U2
CTACACTTGATCTTTTTTTTTTTT
X59360
snRNA
U2
Total number of rows: 2579 Table truncated, full table size 401 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL13992_miRNA-all-v3.4-8x15k-annotation.txt.gz
153.6 Kb
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