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Status
Public on Jun 13, 2005
Title
Yeast Splicing Chip v5.1
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Saccharomyces cerevisiae
Description
This is an oligonucleotide microarray designed to measure splicing in yeast. Each intron containing gene has 3 features (Splice Junction, Intron, Exon2). The SJ oligo symmetrically spans the splice junction with 20nt on each side. The SJ, Int, and Ex2 oligos are custom designed 40-mers. The array also contains about 1000 70-mers from the Operon Yeast Genome Set. All of the SJ, Int, and Ex2 oligos are printed 4 times, the Operon 70-mers are printed only once.
Contributor(s)
Clark TA , Sugnet CW , Ares M , Burckin TA , Nagel RJ Submission date
Aug 12, 2004
Last update date
Jun 16, 2005
Contact name
Todd A Burckin
E-mail(s)
burckin@biology.ucsc.edu Phone
831 459-5245
Fax
831 459-3139
Organization name
University of California Santa Cruz
Department
Molecular, Cell, & Developmental Biology
Lab
Hartzog Lab
Street address
1156 High Street
City
Santa Cruz
State/province
CA
ZIP/Postal code
95062
Country
USA
Samples (64)
GSM28841 , GSM28842 , GSM28843 , GSM28844 , GSM28845 , GSM28846
GSM28847 ,
GSM28848 ,
GSM28849 ,
GSM28850 ,
GSM28862 ,
GSM28863 ,
GSM28864 ,
GSM28865 ,
GSM28866 ,
GSM28867 ,
GSM28868 ,
GSM28869 ,
GSM28870 ,
GSM28871 ,
GSM28873 ,
GSM28874 ,
GSM28875 ,
GSM28876 ,
GSM28877 ,
GSM28878 ,
GSM28879 ,
GSM28880 ,
GSM28881 ,
GSM28882 ,
GSM28887 ,
GSM28888 ,
GSM28890 ,
GSM28891 ,
GSM28892 ,
GSM28893 ,
GSM28894 ,
GSM28895 ,
GSM28896 ,
GSM28897 ,
GSM28899 ,
GSM28900 ,
GSM28901 ,
GSM28902 ,
GSM28903 ,
GSM28904 ,
GSM28905 ,
GSM28906 ,
GSM28907 ,
GSM28908 ,
GSM28909 ,
GSM28910 ,
GSM28911 ,
GSM28912 ,
GSM28913 ,
GSM28914 ,
GSM28915 ,
GSM28916 ,
GSM28917 ,
GSM28918 ,
GSM28919 ,
GSM28920 ,
GSM28921 ,
GSM28922 Series (1)
GSE1684 Exploring functional relationships between components of the gene expression machinery
Data table header descriptions ID
Name Feature Name
ORF Yeast ORF
Type Feature Type
Block Block that the spot was printed in
Row Row within the block
Column Column within the block
SPOT_ID
Data table ID Name ORF Type Block Row Column SPOT_ID 1
Cy3
Cy3
1
1
1
Cy3
2
Printing_Buffer
print_buff
1
1
2
Printing_Buffer
3
RPP1B_SJ
YDL130W SJ
1
1
3
4
SCR1
snoRNA
1
1
4
SCR1
5
YCONTROLAF
neg_control
1
1
5
YCONTROLAF
6
YCONTROL02
neg_control
1
1
6
YCONTROL02
7
YCONTROL63
neg_control
1
1
7
YCONTROL63
8
TAD3_Skip
YLR316C SJ
1
1
8
9
RPL7A_Int2
YGL076C IN
1
1
9
10
HAC1_SJ
YFL031W SJ
1
1
10
11
YER074W-A_Int2
YER074W-A IN
1
1
11
12
U1_snRNA
snRNA
1
1
12
SNR19
13
U4_snRNA
snRNA
1
1
13
SNR14
14
U6_snRNA
snRNA
1
1
14
SNR6
15
TEF4_Int
YKL081W IN
1
1
15
16
pal
E_coli
1
1
16
pal
17
ompB
E_coli
1
1
17
ompB
18
ompA
E_coli
1
1
18
ompA
19
nirD
E_coli
1
1
19
nirD
20
mrcA
E_coli
1
1
20
mrcA
6400 224 Kbytes .Supplementary data files not provided
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