NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL1408 Query DataSets for GPL1408
Status Public on Jun 13, 2005
Title Yeast Splicing Chip v5.1
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Saccharomyces cerevisiae
 
Description This is an oligonucleotide microarray designed to measure splicing in yeast. Each intron containing gene has 3 features (Splice Junction, Intron, Exon2). The SJ oligo symmetrically spans the splice junction with 20nt on each side. The SJ, Int, and Ex2 oligos are custom designed 40-mers. The array also contains about 1000 70-mers from the Operon Yeast Genome Set. All of the SJ, Int, and Ex2 oligos are printed 4 times, the Operon 70-mers are printed only once.
Keywords = Splicing
 
Contributor(s) Clark TA, Sugnet CW, Ares M, Burckin TA, Nagel RJ
Submission date Aug 12, 2004
Last update date Jun 16, 2005
Contact name Todd A Burckin
E-mail(s) burckin@biology.ucsc.edu
Phone 831 459-5245
Fax 831 459-3139
Organization name University of California Santa Cruz
Department Molecular, Cell, & Developmental Biology
Lab Hartzog Lab
Street address 1156 High Street
City Santa Cruz
State/province CA
ZIP/Postal code 95062
Country USA
 
Samples (64) GSM28841, GSM28842, GSM28843, GSM28844, GSM28845, GSM28846 
Series (1)
GSE1684 Exploring functional relationships between components of the gene expression machinery

Data table header descriptions
ID
Name Feature Name
ORF Yeast ORF
Type Feature Type
Block Block that the spot was printed in
Row Row within the block
Column Column within the block
SPOT_ID

Data table
ID Name ORF Type Block Row Column SPOT_ID
1 Cy3 Cy3 1 1 1 Cy3
2 Printing_Buffer print_buff 1 1 2 Printing_Buffer
3 RPP1B_SJ YDL130W SJ 1 1 3
4 SCR1 snoRNA 1 1 4 SCR1
5 YCONTROLAF neg_control 1 1 5 YCONTROLAF
6 YCONTROL02 neg_control 1 1 6 YCONTROL02
7 YCONTROL63 neg_control 1 1 7 YCONTROL63
8 TAD3_Skip YLR316C SJ 1 1 8
9 RPL7A_Int2 YGL076C IN 1 1 9
10 HAC1_SJ YFL031W SJ 1 1 10
11 YER074W-A_Int2 YER074W-A IN 1 1 11
12 U1_snRNA snRNA 1 1 12 SNR19
13 U4_snRNA snRNA 1 1 13 SNR14
14 U6_snRNA snRNA 1 1 14 SNR6
15 TEF4_Int YKL081W IN 1 1 15
16 pal E_coli 1 1 16 pal
17 ompB E_coli 1 1 17 ompB
18 ompA E_coli 1 1 18 ompA
19 nirD E_coli 1 1 19 nirD
20 mrcA E_coli 1 1 20 mrcA

Total number of rows: 6400

Table truncated, full table size 224 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap