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Status
Public on Jun 13, 2005
Title
Yeast Splicing/Expression Chip v6
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Saccharomyces cerevisiae
Description
This is an oligonucleotide microarray designed to measure splicing and expression in yeast. Each intron containing gene has 3 features (Splice Junction, Intron, Exon2). The SJ oligo symmetrically spans the splice junction with 20nt on each side. The SJ, Int, and Ex2 oligos are custom designed 40-mers. The array also contains the Operon Yeast Genome 70-mer Set. All of the SJ, Int, and Ex2 oligos are printed 4 times, the Operon 70-mers are printed twice each.
Contributor(s)
Clark TA , Sugnet CW , Ares M , Burckin TA , Nagel RJ , Lisa T Submission date
Aug 12, 2004
Last update date
Oct 13, 2010
Contact name
Todd A Burckin
E-mail(s)
burckin@biology.ucsc.edu Phone
831 459-5245
Fax
831 459-3139
Organization name
University of California Santa Cruz
Department
Molecular, Cell, & Developmental Biology
Lab
Hartzog Lab
Street address
1156 High Street
City
Santa Cruz
State/province
CA
ZIP/Postal code
95062
Country
USA
Samples (70)
GSM28923 , GSM28924 , GSM28925 , GSM28926 , GSM28927 , GSM28928
GSM28929 ,
GSM28930 ,
GSM28931 ,
GSM28932 ,
GSM28933 ,
GSM28934 ,
GSM28935 ,
GSM28936 ,
GSM28937 ,
GSM28938 ,
GSM28939 ,
GSM28940 ,
GSM28941 ,
GSM28942 ,
GSM28943 ,
GSM28944 ,
GSM28945 ,
GSM28946 ,
GSM28947 ,
GSM28948 ,
GSM28949 ,
GSM28950 ,
GSM28951 ,
GSM28952 ,
GSM28953 ,
GSM28954 ,
GSM28955 ,
GSM28956 ,
GSM28957 ,
GSM28958 ,
GSM28959 ,
GSM28960 ,
GSM28961 ,
GSM28962 ,
GSM28963 ,
GSM28964 ,
GSM28965 ,
GSM28966 ,
GSM28967 ,
GSM28968 ,
GSM28969 ,
GSM28970 ,
GSM28971 ,
GSM28972 ,
GSM28973 ,
GSM28974 ,
GSM28975 ,
GSM28976 ,
GSM28977 ,
GSM28978 ,
GSM28979 ,
GSM28980 ,
GSM28981 ,
GSM28982 ,
GSM28983 ,
GSM28984 ,
GSM28985 ,
GSM28986 ,
GSM28987 ,
GSM28988 ,
GSM28989 ,
GSM28990 ,
GSM28991 ,
GSM28992 Series (1)
GSE1684 Exploring functional relationships between components of the gene expression machinery
Relations Alternative to
GPL11043
Data table header descriptions ID
Name Feature Name
ORF Yeast ORF
Type Feature Type
Block Block that the spot was printed in
Row Row within the block
Column Column within the block
SPOT_ID
Data table ID Name ORF Type Block Row Column SPOT_ID 1
Cy3
Cy3
1
1
1
Cy3
2
RPP1B_SJ
YDL130W SJ
1
1
2
3
YCONTROLAF
neg_control
1
1
3
YCONTROLAF
4
YCONTROL63
neg_control
1
1
4
YCONTROL63
5
RPL7A_Int2
YGL076C IN
1
1
5
6
YER074W-A_Int2
YER074W-A IN
1
1
6
7
U4_snRNA
snRNA
1
1
7
SNR14
8
TEF4_Int
YKL081W IN
1
1
8
9
ompB
E_coli
1
1
9
ompB
10
nirD
E_coli
1
1
10
nirD
11
TUB1_Int_B
YML085C IN
1
1
11
12
Printing_Buffer
print_buff
1
1
12
Printing_Buffer
13
EFB1-Int***U18
YAL003W snoRNA
1
1
13
14
MAF1-Ex2
YDR005C EX
1
1
14
15
COX4-SJ
YGL187C SJ
1
1
15
16
SNC1-SJ
YAL030W SJ
1
1
16
17
RPS11A-Int
YDR025W IN
1
1
17
18
COX4-Ex2
YGL187C EX
1
1
18
19
SNC1-Ex2
YAL030W EX
1
1
19
20
UBC5-SJ
YDR059C SJ
1
1
20
20000 696 Kbytes .Supplementary file Size Download File type/resource GPL1410_YeastChip6.0_GAL.txt.gz
507.8 Kb
(ftp) (http) TXT
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