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Platform GPL14133 Query DataSets for GPL14133
Status Public on Aug 11, 2011
Title Agilent-028686 Tvap454 8x60 K oligo expression array (Probe Name version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Trialeurodes vaporariorum
Manufacturer Agilent
Manufacture protocol 1.Oligos are arrayed in Greiner 384-well flat-bottom plates. Each well contains 600 pmol of 70-mer oligo.
Arrays were designed using Agilent eArray software. Custom gene expression arrays were generated by Agilent Technologies in their 8X60K format. See manufacturer's web site at http://www.agilent.com/.
 
 
Submission date Aug 10, 2011
Last update date Aug 11, 2011
Contact name Nikos Karatolos
E-mail(s) nikolaos.karatolos@rothamsted.ac.uk
Organization name Rothamsted Research
Street address West Common
City Harpenden
State/province Herts
ZIP/Postal code AL5 2JQ
Country United Kingdom
 
Samples (8) GSM776535, GSM776536, GSM776537, GSM776538, GSM776539, GSM776540 
Series (1)
GSE31316 Over-expression of a Cytochrome P450 is Associated with Resistance to Pyriproxyfen in the Greenhouse Whitefly Trialeurodes vaporariorum

Data table header descriptions
ID Probe id (ProbeName) from Agilent eArray design 028686
SEQUENCE Probe sequences
TargetID Name of contigs that correspond to the probes. Contigs are taken from the Trialeurodes vaporariorum 454 assembly daposited in the InsectaCentral database (http://insectacentral.org/). Also, description of control and Agilent features are given.
GB_ACC GenBank Accession number
SPOT_ID control

Data table
ID SEQUENCE TargetID GB_ACC SPOT_ID
(-)3xSLv1 Agilent feature CONTROL
(+)E1A_r60_1 Agilent feature CONTROL
(+)E1A_r60_3 Agilent feature CONTROL
(+)E1A_r60_a104 Agilent feature CONTROL
(+)E1A_r60_a107 Agilent feature CONTROL
(+)E1A_r60_a135 Agilent feature CONTROL
(+)E1A_r60_a20 Agilent feature CONTROL
(+)E1A_r60_a22 Agilent feature CONTROL
(+)E1A_r60_a97 Agilent feature CONTROL
(+)E1A_r60_n11 Agilent feature CONTROL
(+)E1A_r60_n9 Agilent feature CONTROL
CUST_1_PI425265390 CACCAAAGTTGTATCCATGGCAACCAAAGGTGGCACAGCGCCAATAATTTGTACGACTAT IC88556AaEcon29389
CUST_1_PI425308678 ACGTCGTAAAATCGCTCTCGACAATCCGAAAATGCACAATTCGGAAATATCGAAGCGCCT IC88556AaEcon9711
CUST_1_PI425308711 AGGAAATGGATACATCACAACTGACGTGTTGCGTGAGATCTTATATGAATTAGACGATAA IC88556AaEcon31
CUST_1_PI425321683 AGTGTTGTTGTTTGGTTCGAATTTCAAGTATTAGTGTGGTTGTTTGGTTCGAATTTCAGG gb|M10159.1 M10159.1
CUST_10_PI425265390 TAGGTTATAAATTTCCTTTACTCCGCAGAATATCATTCCACTGAGTGTCTTCGTTAGGAT IC88556AaEcon15637
CUST_10_PI425308678 AATTATGTACACCACACACACGCCGTTTGCACATGACCTTGTGGTCATACGAATATCACA IC88556AaEcon12292
CUST_10_PI425308711 GTATCTGAACTTGTAATCTAACGGAGCCCGCTCTGGGAAGTGATCGAGCTTTTAAACTTC IC88556AaEcon8928
CUST_10_PI425321683 GATGAAGGTGGAGTTTCTCGCATGGAGATGGCTTCTTTCATTGCACACATCTCTAGATAG gb|AF116858.1 AF116858.1
CUST_100_PI425265390 CAATTAACCCATTGATTGAAACTGACGAGCCTCACTCGTCTTTGATTATGAGATAAAAAA IC88556AaEcon3371

Total number of rows: 61533

Table truncated, full table size 6273 Kbytes.




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