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Platform GPL14150 Query DataSets for GPL14150
Status Public on Nov 28, 2011
Title Agilent-021750 Schmidtea mediterranea 45K Smed_WI_expression_chip_Reddien_v2 015536 (Feature Number version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Schmidtea mediterranea
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number 015536
 
Description Arrays of this design have barcodes that begin with 16021750 or 2521750.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Aug 15, 2011
Last update date Mar 04, 2013
Contact name Mansi Srivastava
E-mail(s) mansi@wi.mit.edu
Organization name Whitehead Institutue
Lab Reddien
Street address 9 Cambridge Center
City Cambridge
ZIP/Postal code 02142
Country USA
 
Samples (40) GSM785447, GSM785448, GSM785449, GSM785450, GSM785451, GSM785452 
Series (4)
GSE31618 Gene expression profiles of Six1/2-1(RNAi) animals and POU2/3(RNAi) animals
GSE34969 Gene Expression Profiles of Planarians after 6,000 Rads Irradiation
GSE36869 Transcriptional profiling of Schmidtea mediterranea planarians (smed-runt-1 RNAi vs. control RNAi)

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE probe sequence
ID_GENE_TRANSCRIPT

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE CHROMOSOMAL_LOCATION SEQUENCE ID_GENE_TRANSCRIPT
1 266 170 GE_BrightCorner GE_BrightCorner pos
2 266 168 DarkCorner DarkCorner pos
3 266 166 DarkCorner DarkCorner pos
4 266 164 DarkCorner DarkCorner pos
5 266 162 DarkCorner DarkCorner pos
6 266 160 DarkCorner DarkCorner pos
7 266 158 DarkCorner DarkCorner pos
8 266 156 DarkCorner DarkCorner pos
9 266 154 DarkCorner DarkCorner pos
10 266 152 DarkCorner DarkCorner pos
11 266 150 DarkCorner DarkCorner pos
12 266 148 SMED_37879_V2_1 SMED_37879_V2_1 FALSE unmapped TTGTTACAGCCAATACAAGTTACATATTTTTGATTTCCCGGAATCATGACCAATGTGACT SMED_37879_V2
13 266 146 SMED_06312_V2_1 SMED_06312_V2_1 FALSE unmapped GGATGGCGATTCGCTTTCGGAACCTGAGGGACCCAGTTGTGGACCCGAAATTATTTTTGT SMED_06312_V2
14 266 144 SMED_31778_V2_1 SMED_31778_V2_1 FALSE unmapped AATGCTTTCAAAAACCCTTTATCTAGGAACGATGATAAGTTACCTAATTCCTTTGTAAAA SMED_31778_V2
15 266 142 SMED_18465_V2_1 SMED_18465_V2_1 FALSE unmapped GCTATTTAATATTAAATCTTTCCGTACACATCAATTTTTCGACATATATACAAACACAAG SMED_18465_V2
16 266 140 SMED_09415_V2_1 SMED_09415_V2_1 FALSE unmapped CTCCAAAATAAATTATTCTGTTGCTACTTGTGTTACGGTGTTAATTTGGAAATGCGACCG SMED_09415_V2
17 266 138 SMED_33092_V2_1 SMED_33092_V2_1 FALSE unmapped ATATCCGTTTTGAAACCGCTAGCCAATTGGAAGATGATTTTTGTAGCTCCTTATTGAATG SMED_33092_V2
18 266 136 SMED_07603_V2_1 SMED_07603_V2_1 FALSE unmapped GTCAACCATCAATGGGCTATTTAGTCAATATTTCTCTAATCCAGTAGCCTATATGCCTAA SMED_07603_V2
19 266 134 SMED_31192_V2_1 SMED_31192_V2_1 FALSE unmapped CTAGCATCCCACATGGCCTGTCGGCATCGCGCTGCTGTTTGTGCCTGGAAACGCACTGTA SMED_31192_V2
20 266 132 SMED_30578_V2_1 SMED_30578_V2_1 FALSE unmapped CCTATGGTCAATTTGTCACCAACGTTTTCCAATCGTCGCCAAAAAGCTAAATTTCTTTTT SMED_30578_V2

Total number of rows: 45220

Table truncated, full table size 5843 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL14150_021750_D_GEO_20081016.txt.gz 1.4 Mb (ftp)(http) TXT
GPL14150_gene_models.txt.gz 9.7 Mb (ftp)(http) TXT

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