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Platform GPL14569 Query DataSets for GPL14569
Status Public on Sep 12, 2011
Title Agilent-015421 Rhesus Macaque Gene Expression Microarray (Probe Name Version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Macaca mulatta
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description M. mulatta (Rhesus) Oligo Microarray 4x44K

Arrays of this design have barcodes that begin with 16015421 or 2515421.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL9861

 
Submission date Sep 12, 2011
Last update date Aug 12, 2017
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (866) GSM795211, GSM795212, GSM795213, GSM795214, GSM795215, GSM795216 
Series (17)
GSE32069 Gene expression profiling in the Cynomolgus macaque Macca fascicularis shows variation within the normal birth range.
GSE35816 Long-Term Programming of Antigen-Specific Immunity from Gene Expression Signatures in the PBMC of Rhesus Macaques Immunized with an SIV DNA Vaccine
GSE37149 Integrated Clinical, Pathologic, Virologic, and Transcriptomic Analysis of H5N1 Influenza Virus-Induced Viral Pneumonia in the Rhesus Macaque
Relations
Alternative to GPL9861 (Feature Number Version)

Data table header descriptions
ID Probe name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeq Accession
GB_ACC GenBank Accession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE
A_01_P000001 A_01_P000001 FALSE XM_001103444 704781 MEP1A meprin A, alpha (PABA peptide hydrolase) Mmu.9720 gb|XM_001103444 chr4:46665254-46665313 PREDICTED: Macaca mulatta meprin A, alpha (PABA peptide hydrolase) (MEP1A), mRNA [XM_001103444] AGCAGCACCTCCTCCATGCAGGCCTTATTTTCCCATGGTCAGTGCAGTTTGGGGCAGCTT
A_01_P000002 A_01_P000002 FALSE XM_001098620 XM_001098620 701692 DMP1 dentin matrix acidic phosphoprotein 1 ref|XM_001098620|ref|XM_001098525 chr5:80630462-80630521 PREDICTED: Macaca mulatta similar to dentin matrix acidic phosphoprotein, transcript variant 2 (LOC701692), mRNA [XM_001098620] AGTATGGTGAGTGCCAAAACAGAGTTATGAACACGATATCTATCTGGAAGCACTGAGAAG
A_01_P000003 A_01_P000003 FALSE XM_001102063 704662 CAPZA2 capping protein (actin filament) muscle Z-line, alpha 2 Mmu.173 gb|XM_001102063 chr3:154247892-154247951 PREDICTED: Macaca mulatta capping protein (actin filament) muscle Z-line, alpha 2 (CAPZA2), mRNA [XM_001102063] GGTTTCATTCAATAGAGTATTGCTTATTATACTTGAGTGGAATCCTTTCCTCACATACTC
A_01_P000004 A_01_P000004 FALSE XR_011403 699586 LOC699586 similar to tight junction protein 2 (zona occludens 2) isoform 1 Mmu.8508 gb|XR_011403 chr15:78064016-78064075 PREDICTED: Macaca mulatta similar to tight junction protein 2 (zona occludens 2) isoform 1 (LOC699586), mRNA [XR_011403] TGCTGCACAAAAGCAGATACTTGAGGAAAACACTATTTCCAAAAGCACGTGTATTGACAA
A_01_P000005 A_01_P000005 FALSE XM_001087805 XM_001087805 699593 CLPP ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli) Mmu.13859 gb|CK231986|ref|XM_001087805 chr19:006272179-006272238 ILLUMIGEN_MCQ_3172 Katze_MMPL2 Macaca mulatta cDNA 5' similar to human MEST (Hs.416498), mRNA sequence [CK231986] TTGAGGAACTTTTAATTTGCAAGGGTGCCCCCTATGGATGGGGCATTCCAGCTGAGACAC
A_01_P000006 A_01_P000006 FALSE XM_001097191 XM_001097191 ENSMMUT00000005571 ens|ENSMMUT00000005571|ref|XM_001097191 chr10:56888885-56888826 Cystatin-9 Precursor (Cystatin-like molecule) [Source:UniProtKB/Swiss-Prot;Acc:Q5W186] [ENSMMUT00000005571] GTCTGCGGTTTTATGACTTGGCATTTTAGAAACTCCTCATTGTCCAGGTTCCTCATGTAG
A_01_P000007 A_01_P000007 FALSE chr6:034150033-034149974 GGGGCCAGGGATATATAAAGATAAATTTGCCTGAGCTCCCATGTCCAAACAATCCTGAAG
A_01_P000008 A_01_P000008 FALSE XM_001096937 ENSMMUT00000011976 ens|ENSMMUT00000011976 chr15:21816696-21816637 TCCCTCCTGCCTCATCAGGGAAGCAGTACCGCCTGGAAGTTGGACCTGCGTGCTTCCTCT
A_01_P000009 A_01_P000009 FALSE XR_010820 697084 NUCB2 nucleobindin 2 Mmu.9810 gb|XR_010820 chr14:54603275-54603216 PREDICTED: Macaca mulatta nucleobindin 2 (NUCB2), mRNA [XR_010820] ATCTATTTCATCTTTTTAGCTCCCTTCCTTTTTCTCTGCTCAATAAATATTTTAAAAGCA
A_01_P000010 A_01_P000010 FALSE XM_001102038 XM_001102038 ENSMMUT00000029814 ens|ENSMMUT00000029814|ref|XM_001102038 chr13:98290363-98290422 Cyclic nucleotide-gated cation channel alpha-3 (CNG channel alpha-3)(CNG-3)(CNG3)(Cyclic nucleotide-gated channel alpha-3)(Cone photoreceptor cGMP-gated channel subunit alpha) [Source:UniProtKB/Swiss-Prot;Acc:Q16281] [ENSMMUT00000029814] AGCAACGTACAGGGAGAGCCTTTTAGATTGAAGGCTGGAGTGGTGTCCTAAACCAAAAAA
A_01_P000011 A_01_P000011 FALSE XM_001094251 XM_001094251 698444 IGF1 insulin-like growth factor 1 Mmu.4531 gb|XM_001094016|ref|XM_001094251|ref|XM_001094129 chr11:103587190-103587131 PREDICTED: Macaca mulatta similar to insulin-like growth factor 1 (somatomedin C), transcript variant 2 (IGF1), mRNA [XM_001094016] AATTTCCCCTGCTACTTTGAAACCAGAAAATAATGACTGGCCATTCATTATATCTGTCTT
A_01_P000012 A_01_P000012 FALSE XM_001118474 XM_001118474 ENSMMUT00000006487 ens|ENSMMUT00000006487|ref|XM_001118474 chr15:6052815-6052756 BarH-like 1 homeobox protein [Source:UniProtKB/Swiss-Prot;Acc:Q9BZE3] [ENSMMUT00000006487] CAACCTGAACCCCGGCGCGGCGCTCTACCTGTACCGCGGCCCCAGCGCGCCGCCGCCCGC
A_01_P000013 A_01_P000013 FALSE XM_001098298 Mmu.14370 ENSMMUT00000027755 ens|ENSMMUT00000027755|ens|ENSMMUT00000043658|gb|XM_001098298 chr13:27675776-27675835 Kanadaptin (Kidney anion exchanger adapter protein)(Solute carrier family 4 anion exchanger member 1 adapter protein)(Human lung cancer oncogene 3 protein)(HLC-3) [Source:UniProtKB/Swiss-Prot;Acc:Q9BWU0] [ENSMMUT00000027755] TGGTGACTGGCCTTTCCTTCTGTGTTCTTGGCTTCCTAAATTTATCTGCCCATATGATTC
A_01_P000014 A_01_P000014 FALSE NM_001144039 NM_001144039 722215 RPL7A 60S ribosomal protein L7a Mmu.12614 ENSMMUT00000023985 ref|NM_001144039|ens|ENSMMUT00000023985|ens|ENSMMUT00000043154|ens|ENSMMUT00000042722 chr15:5196868-5196809 Macaca mulatta 60S ribosomal protein L7a (RPL7A), mRNA [NM_001144039] ATCCGCCGTCACTGGGGCGGCAATGTCCTGGGTCCCAAGTCTGTGGCTCGTATCGCCAAG
A_01_P000015 A_01_P000015 FALSE tc|TC12052 chr11:111258811-111258870 GCCAGCAGACATTGTCAGCAAATTAATTGGCAGCAGATTTTAGGAAATGAATGTGTGTGG
A_01_P000016 A_01_P000016 FALSE XM_001084809 XM_001084809 695914 LOC695914 cytochrome P450, subfamily XIB polypeptide 2 Mmu.16205 gb|XM_001085034|ref|XM_001084809 chr8:145458218-145458159 PREDICTED: Macaca mulatta cytochrome P450, subfamily XIB polypeptide 2, transcript variant 3 (LOC695914), mRNA [XM_001085034] CTCATGTGCTCCTAATCCAGCAGAGAGAGTTGACCCCTCCTGAACTGGCCACTCCACAGT
A_01_P000017 A_01_P000017 FALSE XM_001089163 Mmu.3237 ENSMMUT00000010310 ens|ENSMMUT00000010310 chr17:2005334-2005275 Probable palmitoyltransferase ZDHHC20 (EC 2.3.1.-)(Zinc finger DHHC domain-containing protein 20)(DHHC-20) [Source:UniProtKB/Swiss-Prot;Acc:Q5W0Z9] [ENSMMUT00000010310] TAAAAAAGAAGCTTTGTACAGTCCTGGGATCCACAGACGCACTGCTCCAGAGCGGAACGA
A_01_P000018 A_01_P000018 FALSE XM_001114814 Mmu.15894 ENSMMUT00000032865 ens|ENSMMUT00000032865|ens|ENSMMUT00000032859|ens|ENSMMUT00000032861|ens|ENSMMUT00000032863 chr12:97182605-97182664 Autophagy-related protein 16-1 (APG16-like 1) [Source:UniProtKB/Swiss-Prot;Acc:Q676U5] [ENSMMUT00000032865] TCACGGGCCAGGGCACATCTTTTATTTATTTCGTTATGTTGCCCAACAGAACTTGATTGT
A_01_P000019 A_01_P000019 FALSE XM_001091406 XM_001091406 Mmu.14557 ENSMMUT00000041508 ens|ENSMMUT00000041508|gb|XM_001091282|ref|XM_001091406 chr4:2880518-2880577 Ribosyldihydronicotinamide dehydrogenase [quinone] (EC 1.10.99.2)(NRH dehydrogenase [quinone] 2)(NRH:quinone oxidoreductase 2)(Quinone reductase 2)(QR2) [Source:UniProtKB/Swiss-Prot;Acc:P16083] [ENSMMUT00000041508] GTAAGCAGCACACTAGGAGACCCAGGCGCAGGCAAAGAGAAGACGGTGCTGTCATGAAAT
A_01_P000020 A_01_P000020 FALSE XM_001102140 XM_001102140 Mmu.1278 ENSMMUT00000045066 ens|ENSMMUT00000045066|ens|ENSMMUT00000024980|gb|XM_001102229|ref|XM_001102140 unmapped Ly6/PLAUR domain-containing protein 3 Precursor (GPI-anchored metastasis-associated protein C4.4A homolog)(Matrigel-induced gene C4 protein)(MIG-C4) [Source:UniProtKB/Swiss-Prot;Acc:O95274] [ENSMMUT00000045066] ACCGTGCCTTATGCCTGTGTGTGATCAGTTTCTGGCACACAGATGCCTCAATAAAGATTT

Total number of rows: 20278

Table truncated, full table size 6007 Kbytes.




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