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Platform GPL14573 Query DataSets for GPL14573
Status Public on Sep 13, 2011
Title Agilent-014716 Mouse Promoter ChIP-on-Chip Set 244K, Microarray 1 of 2 (G4490A) (Probe Name version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4490A
 
Description
Mouse Promoter ChIP-on-Chip Set 244K 1 of 2

Arrays of this design have barcodes that begin with 16014716 or 2514716.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*****The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL4128
 
Submission date Sep 13, 2011
Last update date Sep 21, 2011
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (26) GSM799892, GSM799893, GSM799894, GSM921140, GSM921141, GSM943693 
Series (10)
GSE32289 Rybp ChIP-chip in mouse ES cells
GSE32294 Expression regulation by RYBP in mouse embryonic stem cells
GSE37526 SAM domain polymerization links subnuclear clustering of PRC1 to silencing (ChIP-chip)
Relations
Alternative to GPL4128 (Feature Number version)

Data table header descriptions
ID Agilent Probe Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GB_RANGE NCBI Build 35.1 Accession.Version[start..end]

Data table
ID SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GB_RANGE
A_68_P20002749 A_68_P20002749 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:2640|ens|ENSMUST00000070533:2490 chr1:003664407-003664466 INSIDE NC_000067.3[003664407..003664466]
A_68_P20002750 A_68_P20002750 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:2508|ens|ENSMUST00000070533:2358 chr1:003664539-003664598 INSIDE NC_000067.3[003664539..003664598]
A_68_P20002751 A_68_P20002751 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:2347|ens|ENSMUST00000070533:2197 chr1:003664700-003664759 INSIDE NC_000067.3[003664700..003664759]
A_68_P20002752 A_68_P20002752 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:2227|ens|ENSMUST00000070533:2077 chr1:003664823-003664875 INSIDE NC_000067.3[003664823..003664875]
A_68_P20002753 A_68_P20002753 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:2114|ens|ENSMUST00000070533:1964 chr1:003664935-003664989 INSIDE NC_000067.3[003664935..003664989]
A_68_P20002754 A_68_P20002754 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:1972|ens|ENSMUST00000070533:1822 chr1:003665075-003665134 INSIDE NC_000067.3[003665075..003665134]
A_68_P20002755 A_68_P20002755 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:1854|ens|ENSMUST00000070533:1704 chr1:003665193-003665252 INSIDE NC_000067.3[003665193..003665252]
A_68_P20002756 A_68_P20002756 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:1676|ens|ENSMUST00000070533:1526 chr1:003665371-003665430 INSIDE NC_000067.3[003665371..003665430]
A_68_P20002757 A_68_P20002757 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:1565|ens|ENSMUST00000070533:1415 chr1:003665484-003665538 INSIDE NC_000067.3[003665484..003665538]
A_68_P20002758 A_68_P20002758 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:1395|ens|ENSMUST00000070533:1245 chr1:003665652-003665711 INSIDE NC_000067.3[003665652..003665711]
A_68_P20002760 A_68_P20002760 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:1186|ens|ENSMUST00000070533:1036 chr1:003665861-003665920 INSIDE NC_000067.3[003665861..003665920]
A_68_P20002762 A_68_P20002762 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:1036|ens|ENSMUST00000070533:886 chr1:003666011-003666070 INSIDE NC_000067.3[003666011..003666070]
A_68_P20002764 A_68_P20002764 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:781|ens|ENSMUST00000070533:631 chr1:003666273-003666317 INSIDE NC_000067.3[003666273..003666317]
A_68_P20002766 A_68_P20002766 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:530|ens|ENSMUST00000070533:380 chr1:003666523-003666569 INSIDE NC_000067.3[003666523..003666569]
A_68_P20002769 A_68_P20002769 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:162|ens|ENSMUST00000070533:12 chr1:003666892-003666936 INSIDE NC_000067.3[003666892..003666936]
A_68_P20002771 A_68_P20002771 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:-296|ens|ENSMUST00000070533:-446 chr1:003667350-003667394 PROMOTER NC_000067.3[003667350..003667394]
A_68_P20002773 A_68_P20002773 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:-489|ens|ENSMUST00000070533:-639 chr1:003667543-003667587 PROMOTER NC_000067.3[003667543..003667587]
A_68_P20002776 A_68_P20002776 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:-798|ens|ENSMUST00000070533:-948 chr1:003667852-003667897 PROMOTER NC_000067.3[003667852..003667897]
A_68_P20002777 A_68_P20002777 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:-917|ens|ENSMUST00000070533:-1067 chr1:003667971-003668015 PROMOTER NC_000067.3[003667971..003668015]
A_68_P20002780 A_68_P20002780 FALSE NM_001011874 Xkr4 ref|NM_001011874|ref|Xkr4:-1181|ens|ENSMUST00000070533:-1331 chr1:003668228-003668287 PROMOTER NC_000067.3[003668228..003668287]

Total number of rows: 240511

Table truncated, full table size 43386 Kbytes.




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Supplementary data files not provided
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