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Platform GPL14777 Query DataSets for GPL14777
Status Public on Dec 31, 2011
Title Ambion 14K miRChip V1 [expanded format]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Ambion miRChip V1array, manufactured by Affymetrix, offers the most content, with probes for verified Sanger miRNAs and more than 12,000 predicted miRNAs. Ambion array contains Sanger 9.0 content along with predicted miRNA seqeunces described in papers by: Cummins, Proc Natl Acad Sci USA 103(10):3687-92, 2006); Xie, Nature 434(7031):338-45, 2005); Berezikov, Cell 120(1):21-4, 2005) and Bentwich, Nat Genet. 2005 Jul;37(7):766-70.
The probes are up to 25 mers depending on the mature/putative miRNA length. This array is offered exclusively through Asuragen under the DiscovArray miRNA profiling service. For more information go to http://www.asuragen.com/Services/Solutions/discovarray.aspx
 
Description Two overlapping probes were designed for each mature miRNA candidate.
 
Submission date Oct 24, 2011
Last update date Dec 31, 2011
Contact name Philip T. Liu
E-mail(s) ptliu@mednet.ucla.edu
Phone 310-206-8457
Organization name University of California at Los Angeles
Department Department of Orthopaedic Surgery
Lab Liu Lab
Street address 615 Charles E Young Drive South, 410 OHRC
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Samples (11) GSM821604, GSM821605, GSM821606, GSM821607, GSM821608, GSM821609 
Series (1)
GSE33192 miRNA expression profile in leprosy skin biopsy specimens

Data table header descriptions
ID The unique identifier string for a given probe, matched to Sanger v 9.2
miRNA_ID The Sanger ID of the mature MicroRNA targeted by the probe

Data table
ID miRNA_ID
aga-bantam_st1 aga-bantam
aga-bantam_st2 aga-bantam
aga-let-7_st1 aga-let-7
aga-let-7_st2 aga-let-7
aga-miR-10_st1 aga-miR-10
aga-miR-10_st2 aga-miR-10
aga-miR-124_st1 aga-miR-124
aga-miR-124_st2 aga-miR-124
aga-miR-13b_st1 aga-miR-13b
aga-miR-13b_st2 aga-miR-13b
aga-miR-14_st1 aga-miR-14
aga-miR-14_st2 aga-miR-14
aga-miR-1_st1 aga-miR-1
aga-miR-1_st2 aga-miR-1
aga-miR-210_st1 aga-miR-210
aga-miR-210_st2 aga-miR-210
aga-miR-219_st1 aga-miR-219
aga-miR-219_st2 aga-miR-219
aga-miR-263_st1 aga-miR-263
aga-miR-263_st2 aga-miR-263

Total number of rows: 28251

Table truncated, full table size 828 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL14777_miRChip1s520189F.cdf.gz 543.3 Kb (ftp)(http) CDF

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